BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3408.p
         (176 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981838|ref|YP_001352878.1| ChrA half sized-like protein [J...   244   2e-66
gi|152981928|ref|YP_001351866.1| ChrA half sized-like protein [J...    84   6e-18

>gi|152981838|ref|YP_001352878.1| ChrA half sized-like protein
           [Janthinobacterium sp. Marseille]
          Length = 176

 Score =  244 bits (624), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 117/169 (69%), Positives = 146/169 (86%)

Query: 1   MSQTLIALAIIFTQLSVLAFGGGNTILPEMQRQVVEVHHWMSAEDFSALFALGQAAPGPN 60
           M+QTLIAL +IF+QLS+LAFGGGN ILPEMQRQVVEVH WMSA++FSALFAL QAAPGPN
Sbjct: 1   MTQTLIALFLIFSQLSLLAFGGGNAILPEMQRQVVEVHQWMSAKEFSALFALSQAAPGPN 60

Query: 61  LMVVTLVGWHVAGFWGMLVTSLAKFGPSSIITVIMLHVWERFKDKPWRRHVQAGLLPVTG 120
           +M+V LVGW VAG+ GMLVT++AKFGPSS++T++ LH WERFKDKPWR ++Q+G++PVT 
Sbjct: 61  MMIVNLVGWQVAGWAGMLVTAIAKFGPSSLLTIMSLHAWERFKDKPWRAYIQSGMVPVTA 120

Query: 121 GLVAASALLITQASITHGFLAAITAATAIIALKTKIHPLWLLFGGALAG 169
           G+VAASA++I  AS T+  L AIT  +A++A KT+IHPLWLL  G+LA 
Sbjct: 121 GIVAASAVVIAHASDTNWLLTAITVVSALLAWKTRIHPLWLLLVGSLAA 169


>gi|152981928|ref|YP_001351866.1| ChrA half sized-like protein
           [Janthinobacterium sp. Marseille]
          Length = 186

 Score = 83.6 bits (205), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 12  FTQLSVLAFGGGNTILPEMQRQVVEVHHWMSAEDFSALFALGQAAPGPNLMVVTLVGWHV 71
           +  LS+L+ GG     PEM R +V+  HW++   FS    + QAAPGPN++ V L+GW++
Sbjct: 13  YVSLSLLSLGGAIAAAPEMHRYLVDEQHWLTDAQFSTSITIAQAAPGPNVLFVALMGWNI 72

Query: 72  --------AGFWGMLVTSLAKFGPSSIITVIMLHVWERFKDKPWRRHVQAGLLPVTGGLV 123
                   AG  GM V  +    PS+  T +        +     R  + G+ P+  GLV
Sbjct: 73  GLNAGDMSAGLLGMAVCMVGILLPSTTFTYLATRWVHHNRQLRSVRAFKLGMGPIVVGLV 132

Query: 124 AASALLITQASITHGF---LAAITAATAIIALKTKIHPLWLLFGGALAG 169
            A+  ++  A         L  IT  T ++ L T+IH LWLL  GAL G
Sbjct: 133 FATGWILASAHSKPSEDWPLWLITVITMLLMLNTRIHILWLLAAGALIG 181


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 406,690
Number of extensions: 14780
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 3
Length of query: 176
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 99
Effective length of database: 936,352
Effective search space: 92698848
Effective search space used: 92698848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)