BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3403.p (405 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981910|ref|YP_001352754.1| multidrug efflux system transme... 214 6e-57 gi|152982001|ref|YP_001355170.1| ABC export system, membrane fus... 191 5e-50 gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote... 58 1e-09 gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthi... 57 2e-09 gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi... 55 9e-09 >gi|152981910|ref|YP_001352754.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 570 Score = 214 bits (546), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 126/330 (38%), Positives = 190/330 (57%), Gaps = 22/330 (6%) Query: 20 RQKMWGS----ALALVLVLGGGYW----LYSRQQPVPPAAKPIPVKLETVTVERADLEQV 71 RQ+++ A +VL+ GGYW Y ++ P + I + V+R D++ + Sbjct: 11 RQRLFSRRALIAFLIVLLAAGGYWGWKKFYGKKDP-----REI---YQVAEVQRGDIQDL 62 Query: 72 VNATGNVVAQDYVDVGSKVAGQISDVDVVIGETVKAGRLLATVAPAVQSSRIESNRATLA 131 V ATG V +YVDVG++V+GQ+ + + +G VK G LLA + P V + +++ RA L Sbjct: 63 VTATGTVQPLEYVDVGAQVSGQLKKLYIEVGSVVKEGDLLAEIDPTVFLATVDARRAGLR 122 Query: 132 RLKAELAGQNAQLDFAQLQFQRQTQLKAENATREESYESSRMNMAAAASRVDATNAQIQQ 191 A + + +QL A LQ+ RQ L A +AT ES +++ + +A +++DA AQI+Q Sbjct: 123 NQLATMKDRESQLALATLQYNRQKNLMAADATTTESLQTAEATLRSAKAQIDALQAQIEQ 182 Query: 192 TEAAIREDEAVQKQTRIEAPANGTIVTLNARPGQMVGANQE--VLMRIADLSRMTVQVPV 249 T++ +R DEA +I AP +GT+V+L AR GQ + ANQ ++RIADLS MTVQ V Sbjct: 183 TQSTLRADEANLNYAKIYAPMDGTVVSLTARQGQTLNANQTAPTILRIADLSTMTVQTQV 242 Query: 250 AEEDVTRLQKGMTAYFTTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAYYTVLFDVANPS 309 +E +V +L+KGM YFTT G G+RW G LR++ PT + Y LFDV N + Sbjct: 243 SEAEVGKLRKGMEVYFTTLGSQGRRWYGALRKVEPTPTVTN----NVVLYNALFDVPNKN 298 Query: 310 RELMSGMSADVYFVLARAEHVPTIPRTLVT 339 + LM M+ V+F+ A A +P VT Sbjct: 299 QALMPSMTTQVFFIAATARDALLVPTAAVT 328 >gi|152982001|ref|YP_001355170.1| ABC export system, membrane fusion protein [Janthinobacterium sp. Marseille] Length = 392 Score = 191 bits (486), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 127/344 (36%), Positives = 199/344 (57%), Gaps = 17/344 (4%) Query: 57 KLETVTVERADLEQVVNATGNVVAQDYVDVGSKVAGQISDVDVVIGETVKAGRLLATVAP 116 + E V R ++E V A G + V+VG++V+GQ+ + V G+ VK G+LLA + Sbjct: 37 QFEVAPVARGNIEATVTAIGTLQPMSSVEVGAQVSGQVLKLHVQPGDVVKKGQLLAEIDA 96 Query: 117 AVQSSRIESNRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAENATREESYESSRMNMA 176 +V + +++ RA L+A+LA Q AQ + Q RQ Q+ + +TR E +++ N+A Sbjct: 97 SVLQATVDAGRAQQNELQAQLAEQRAQHRLSSQQHDRQQQMHKDESTRLEDVQTAEANLA 156 Query: 177 AAASRVDATNAQIQQTEAAIREDEAVQKQTRIEAPANGTIVTLNARPGQMVGANQE--VL 234 AA +R+ T A+I QT+++++ DEA TRI AP GT++ ++A+ GQ + A + L Sbjct: 157 AAVARIAQTQARIVQTQSSLKADEARLGYTRIYAPMGGTVIGIDAKEGQTLNATYQTPTL 216 Query: 235 MRIADLSRMTVQVPVAEEDVTRLQKGMTAYFTTPGYPGKRWSGKLRQIMLLP-----TDD 289 MRIADLS MTV V+E D+ R++ G AYFTT +RW+G++RQ++ P T Sbjct: 217 MRIADLSAMTVWTTVSEADIRRVKAGQAAYFTTLAGDRRRWTGEVRQVLPAPPVAAATQS 276 Query: 290 SGRQ---GKKAYYTVLFDVANPSRELMSGMSADVYFVLARAEHVPTIPRTLV----TKPG 342 S Q K YTVLFDV N EL+ M+A V F+ A A V P + + KP Sbjct: 277 SPNQTPVSKVVQYTVLFDVDNKDAELLPQMTAQVSFITASARDVLVAPLSALQPVEQKPQ 336 Query: 343 MDGTQTVKVVLADGTLESRKIKIGIRDGERAQVLSGLKEGEQVL 386 + T +++ +D ++R+++ G+ D QVL GLKEGE+++ Sbjct: 337 V---YTARILGSDDKPQAREVRAGVNDRLAVQVLEGLKEGEKLI 377 >gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein A precursor [Janthinobacterium sp. Marseille] Length = 422 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 150/355 (42%), Gaps = 42/355 (11%) Query: 50 AAKPIPVKLETVTVERADLEQVVNATGNVVAQDYVDVGSKVAGQISDVDVVIGETVKAGR 109 AA P P ++ VTV+ L G + + +V ++V G + G VKAG Sbjct: 30 AAAPPPQEVSVVTVQPGVLGVTNELPGRMESIRVAEVRARVPGIVLKRVFREGSDVKAGT 89 Query: 110 LLATVAPAVQSSRIESNRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAENATREESYE 169 LL + PA + S A +AR +A LA A+ + +R L NA ++ Y+ Sbjct: 90 LLYQIDPAQLQATYNSADAAVARGEATLA-------TAEQKAKRYKPLVETNAVSKQEYD 142 Query: 170 SSRMNMAAAASRVDATNAQIQQTEAAIREDEAVQ-KQTRIEAPANGTIVTLNARPGQMVG 228 ++AAA + A A + A RE+ + + +P +G I G +VG Sbjct: 143 ----DVAAAEKQAIADLASAK----AARENARLSLGYASVTSPISGRIGRALVTEGALVG 194 Query: 229 ANQEV-LMRIADLSRMTVQVPVAEEDVTRLQKGMTAYFTTPGYPGK-RWSGKLRQIMLLP 286 L + + + V + + +V +L++ M GK + +GK + L Sbjct: 195 QGDVTPLAIVQQIDPIYVNMTQSANEVLKLKRAMD--------EGKLKSAGKGAAKVTLV 246 Query: 287 TDDS---GRQGKKAYYTVLFD-----------VANPSRELMSGMSADVYFVLARAEHVPT 332 TDD GR GK + + D + NP L+ GM A E+ T Sbjct: 247 TDDGQEYGRAGKLLFSDLTVDESSGSVTLRAEIPNPDGLLLPGMYVRARIEQAVDENAIT 306 Query: 333 IPRTLVTKPGMDGTQTVKVVLADGTLESRKIKIGIRDGERAQVLSGLKEGEQVLL 387 +P+ V + G V VV ADG + SR ++ G G + GLKEG+QV++ Sbjct: 307 VPQQAVLR--TPGGSAVMVVGADGKVASRPVQTGSSSGTAWIITDGLKEGDQVIV 359 >gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 377 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 88/335 (26%), Positives = 148/335 (44%), Gaps = 30/335 (8%) Query: 58 LETVTVERADLEQVVNATGNVVAQDYVDVGSKVAGQISDVDVVIGETVKAGRLLATVAPA 117 ++TV + + VNA G V A VDV KV + + V G+ VKAG+LL T+ Sbjct: 41 VKTVIATQKTIPITVNANGYVTAVSTVDVRPKVQNIVRTIHVKEGQFVKAGQLLFTLDE- 99 Query: 118 VQSSRIESNRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAENATREESYESSRMNMAA 177 S+++ +A+ AELA A+L A+ +R L A+N + +++R Sbjct: 100 ------RSDQSNVAKASAELAAAQAELADAEQILKRNQDLLAKNFVSQAVVDTAR----- 148 Query: 178 AASRVDATNAQIQQTEAAIREDEAVQKQTRIEAPANGTIVTLNARPGQMVGANQEVLMRI 237 ++VDA + +AAI+ +I+A +G I +N PG + V++ I Sbjct: 149 --NKVDALRNTTRANQAAIQSSSVALSDNQIKAGISGRIGVINVHPGSLAQPTGTVMVTI 206 Query: 238 ADLSRMTVQVPVAEEDVTRL-----QKGMTAYFTTPGYPGKRWSGKLRQIMLLPTDDSGR 292 + + + + E ++ + Q + PG + +GKL I L SG Sbjct: 207 VQIDPIMISFTLPERELANIRATYPQGNAPVHAQLPGQ--EVLTGKLTFIDNLADTQSGT 264 Query: 293 QGKKAYYTVLFDVANPSRELMSGMSADVYFVLARAEHVPTIPRTLVTKPGMDGTQTVKVV 352 KA + AN ++L G +V V +P V +D + V VV Sbjct: 265 IRMKAEF------ANAEQKLWPGSYINVSMVSREVPDAVLVPAQAVVTGPVD--KLVYVV 316 Query: 353 LADGTLESRKIKIGIRDGERAQVLSGLKEGEQVLL 387 D T++ KI + +G +A V SG+K G +V++ Sbjct: 317 QPDDTVKEEKISVLAIEGGQAAV-SGVKAGSRVVV 350 >gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 416 Score = 54.7 bits (130), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 136/305 (44%), Gaps = 31/305 (10%) Query: 101 IGETVKAGRLLATVAPAVQSSRIESNRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAE 160 IG+ VK G LLA + + ++ +AT A+ A N QL A+ F+R L+ Sbjct: 116 IGDPVKRGDLLAVIDTPEVAQQLNEAKATQAQ-----ATTNLQL--AKSTFERWDALRKR 168 Query: 161 NATREESYESSRMNMAAAASRVDATNAQIQQTEAAIREDEAVQKQTRIEAPANGTIVTLN 220 +A ++ + R +A A + +++ A +Q+ + + +RI AP +G + N Sbjct: 169 DAVSQQDLDEKRNALAVAVAADNSSKATVQRLQDQL-------GYSRIVAPFDGIVTRRN 221 Query: 221 ARPGQMV--GANQEVLMRIADLSRMTVQVPVAEEDVTRLQKGMTAYFTTPGYPGKRWSGK 278 G +V G + VL +A + V V V + T+++ G T T PGK + GK Sbjct: 222 IDIGTLVDSGGSTRVLFTLAKSDPLRVYVYVPQSYSTQIKAGNTVGITLNEIPGKVFDGK 281 Query: 279 L-RQIMLLPTDDSGRQGKKAYYTVLFDVANPSRELMSGMSADVYFVLARAEHVP-TIP-R 335 + R + T Q V D+ NP L+ G A V + TIP Sbjct: 282 IARTAGAIDTVTRTLQ-------VAIDLPNPDGVLLPGAYAQVAIKASGGSASSLTIPNN 334 Query: 336 TLVTKPGMDGTQTVKVVLADGTLESRKIKIGIRDGERAQVLSGLKEGEQVLLPANPPQPE 395 TL+ +P +G + V VV DG + + + I G ++ SG+ +++++ NP Sbjct: 335 TLLFRP--EGPR-VAVVGDDGKVRLQPVVIARELGVDIELASGVTAQDKLII--NPADSL 389 Query: 396 GAGNA 400 G+A Sbjct: 390 SNGDA 394 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.129 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 829,274 Number of extensions: 30969 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 13 Length of query: 405 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 320 Effective length of database: 906,776 Effective search space: 290168320 Effective search space used: 290168320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)