BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3402.p (496 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [... 362 e-101 gi|152979834|ref|YP_001352756.1| outer membrane efflux protein [... 312 3e-86 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 194 1e-50 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 193 2e-50 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 192 4e-50 >gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 473 Score = 362 bits (928), Expect = e-101, Method: Compositional matrix adjust. Identities = 214/453 (47%), Positives = 293/453 (64%), Gaps = 8/453 (1%) Query: 34 LTVAGCVTREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFGSSELSELVQE 93 L +AGC T+ Q + E+ P A+ D + DWW+ FGSSEL L++ Sbjct: 11 LLLAGCATQATQQTLVPEV-APQWRQPQANVDATGTTSVLT-RDWWRSFGSSELDSLLET 68 Query: 94 GQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGATREMPISG---GTPTNTA-NA 149 Q +Y+IAAA +RV QAQA A IAGA LLP + + GATR + G GT T T A Sbjct: 69 VQVQSYDIAAAVARVTQAQATATIAGAALLPELNGNFGATRNGRLGGDGNGTATGTVYQA 128 Query: 150 SLQVSYEIDFWGKNRAGVEAAEATLRANRYDQQTVALTVTSGIVSTYLQVLSLRDRLEIA 209 L +YE+DFWG+NRA ++A A LRA +D+ TV LTVT+G+ S++LQ + LR+R+ IA Sbjct: 129 GLSATYELDFWGRNRAVRDSARAGLRAAEFDRDTVHLTVTAGVASSWLQTVGLRERVAIA 188 Query: 210 RQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALANQRQLIPDLQQQEQDAQTALAILL 269 +V +A+R+L ++E+++RAGAA+PL+LA+QR LA Q + ++QQ +D+ T LA+LL Sbjct: 189 DLSVASAQRLLDVIESRARAGAANPLELAQQRGVLAAQMRARAAIRQQAEDSLTTLAVLL 248 Query: 270 GRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEANLAAANANVAVARAALFP 329 GR P + L K+Q P + AGLP++LL RRPDI RAEA L+ A+AN+ ARAA+ P Sbjct: 249 GRNPSLLVLAGTELNKLQAPAVVAGLPADLLVRRPDIARAEAQLSGADANIIAARAAMLP 308 Query: 330 SISLTGSTGAQSSALLSLFDGPNLFASLGASLIAPIFDGGNLRNQQALAEAQKEELVQVY 389 ISL G A S+ + S+FD P SL A L APIF+ G L + LA AQ+EEL+ Y Sbjct: 309 RISLGGDITAGSNRVSSVFDNP--VYSLAAGLAAPIFNAGRLAAGRDLALAQREELLANY 366 Query: 390 RQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRYRAGAEDLLVVLDTQ 449 R+ ++ + +VE AL A+ ++ + + E+ QA+ AF LAE RYRAGAE L +LD Q Sbjct: 367 RRAIVAAFGDVEVALNAVAGIDAQRIAQEEELRQAQRAFNLAESRYRAGAETSLTLLDAQ 426 Query: 450 RTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 482 RTL AQ+ Q++ RLQA VSLYKALGGGWQ Sbjct: 427 RTLYAAQDAAAQLRTLRLQAAVSLYKALGGGWQ 459 >gi|152979834|ref|YP_001352756.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 471 Score = 312 bits (799), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 209/469 (44%), Positives = 296/469 (63%), Gaps = 20/469 (4%) Query: 22 RPTRLTLAVTLVLTVAGCVTREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQ 81 R TRL LA+ VL + C R T P LEM P W +SA A ++ DWW+ Sbjct: 8 RHTRLALAIAAVLALGACAGRIDATKPNLEM--PASWTEASSA-TAELQR-----DWWRG 59 Query: 82 FGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSA--GATREMP-- 137 FGS ELS L+ + NN ++ A RV QA+ AR+AGA L P + +SA G P Sbjct: 60 FGSDELSGLIDQALANNPDLNIAAERVTQAEITARLAGASLFPLLTVSANTGVGSSKPGQ 119 Query: 138 ---ISGGTPTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDQQTVALTVTSGIVS 194 +G T ++ +L V+YE+D WG+ A A A+L A+RYD +TV LT+T+G+ + Sbjct: 120 TATATGWTRNESSGVALAVAYEVDVWGRVAAVASGANASLNASRYDMETVRLTLTTGVAN 179 Query: 195 TYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALANQRQLIPDL 254 Y Q L+LR RL++A++N+ AE+V +VEA+ R G+AS LD++RQR A+ QR ++ L Sbjct: 180 AYFQTLALRVRLKVAQENLAIAEKVYSIVEARYRFGSASALDMSRQRGAVLAQRNILLPL 239 Query: 255 QQQEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEANLA 314 Q QE+ +ALAILLGR PQ +V + L + +P +S GLPS L+TRRPD+ EA L Sbjct: 240 QVQERQTVSALAILLGRQPQALQVAAQDLNVLTVPEVSPGLPSTLITRRPDLASVEAQLF 299 Query: 315 AANANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGASLIAPIFDGGNLRNQ 374 AA+ANVA ARAAL P+ISLTG+ G S+ALL+L + P L AS + +FDG LR Q Sbjct: 300 AADANVAAARAALLPTISLTGAAGNSSAALLALGN-PAYSVGLTASFVQTLFDGNRLRLQ 358 Query: 375 QALAEAQKEELVQVYRQRVITSLSEVEKAL-GAIRSL-EERYRLKVGEVDQARFAFELAE 432 +E+ + +LV+ YR+ V SL EV+ AL A R+L +E+ ++++ ++AR A +L+E Sbjct: 359 VETSESVRRQLVESYRRTVYASLKEVDDALSNASRNLAQEQAQIEIR--NEARRALQLSE 416 Query: 433 IRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGW 481 +RYR GA+DL +LD QRTL A +Q+ Q +L RL T ++K+LGGGW Sbjct: 417 LRYREGADDLNTLLDAQRTLFAADDQVAQQRLLRLTGTTDVFKSLGGGW 465 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 194 bits (492), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 150/469 (31%), Positives = 234/469 (49%), Gaps = 20/469 (4%) Query: 27 TLAVTLVLTVAGCVTREVQTDPILEMQVPDKWGGGASADVAHAEQLWP------DTD--- 77 T+ LVL AGC T + L++ +P+ + ++ + W + D Sbjct: 10 TMVAALVL--AGCSTARPPEE--LKLDLPNAYREQSTVKANELDGAWKLAAPADNKDRGA 65 Query: 78 WWKQFGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGATREMP 137 WWK FG +LS L+ E +N +A A +RVK A+A A + A V G TR Sbjct: 66 WWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADRGVQVDAGVGPTRSGN 125 Query: 138 ISGGTPTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDQQTVALTVTSGIVSTYL 197 G + A L +YE+D +G+ AA ++V L + S + Y Sbjct: 126 AQGAS--TQYRAPLSFAYEVDLFGRLSDASRAARLDAEGQEAAYRSVLLALQSDVAQQYF 183 Query: 198 QVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALANQRQLIPDLQQQ 257 + SL +++ + V + L L + + AG S LD+A+ ++ A + +++Q Sbjct: 184 TIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWATTSAELEGVKRQ 243 Query: 258 EQDAQTALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEANLAAAN 317 ALAILLG+ P F + LA + + +GLPS+LL RRPDI +A+ LAA++ Sbjct: 244 RAQRDHALAILLGKAPAEFTLPVAPLAAAVVT-VPSGLPSDLLERRPDIAQAQRQLAASS 302 Query: 318 ANVAVARAALFPSISLTGSTGAQSSALLSLFDGPN----LFASLGASLIAPIFDGGNLRN 373 A + A+AA FP + LTGS G +S+ L LF + L +G L P+FDGG ++ Sbjct: 303 ARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVVGTILSMPLFDGGRNQS 362 Query: 374 QQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEI 433 A A+A E LV YR +V+ +VE L A+R+L+ + + + V+ A+ A LA+ Sbjct: 363 NLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEEQAVNSAQLASRLADT 422 Query: 434 RYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 482 RYR G+ V+D QR+ +Q + QR A+V L +ALGGGW+ Sbjct: 423 RYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALGGGWE 471 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 193 bits (491), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 149/460 (32%), Positives = 228/460 (49%), Gaps = 11/460 (2%) Query: 30 VTLVLTVAGCVTREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFGSSELSE 89 +TL L AG ++ + P G + + + D W F L Sbjct: 4 ITLALLAAGVLSACSMAPKYVRPDAPVAADYGVPSKADNNQVRAVDIGWRNFFTDPRLQV 63 Query: 90 LVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGATR-EMPIS-GGTPTNTA 147 L+ NN ++ A R+++A+A I A LLP + ++A +R +P S T ++ Sbjct: 64 LIGNAIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPASISNTGSSVV 123 Query: 148 NASLQV-----SYEIDFWGKNRAGVEAAEATLRANRYDQQTVALTVTSGIVSTYLQVLSL 202 +++ QV ++E+DF+G+ R+ +AA A + Q+ +++ S + YL S Sbjct: 124 SSNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVAKAYLSERSF 183 Query: 203 RDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALANQRQLIPDLQQQEQDAQ 262 ++ ++ARQ + +L + + GA+S LDL + L R Q+Q A Sbjct: 184 AEQQDLARQTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQTARAAELLAQRQRAQAM 243 Query: 263 TALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEANLAAANANVAV 322 AL +L+G+P + + ++ + I AGLPS+LLT+RPDIR AE L +ANAN+ Sbjct: 244 NALTLLVGQPLTDLPPAQALSSQTILTDIPAGLPSDLLTQRPDIRSAEQTLLSANANIGA 303 Query: 323 ARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGASLIAPIFDGGNLRNQQALAEAQK 382 ARAA FP ISLT G S+ L LF+G + S L+ PIFD G R LAE +K Sbjct: 304 ARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIFDAGRNRGNLNLAEVRK 363 Query: 383 EELVQVYRQRVITSLSEVEKALGAIRSLEERYRLK--VGEVDQARFAFELAEIRYRAGAE 440 + V Y + + + EV AL A L+++ + V E RF F A R++ G Sbjct: 364 DIAVANYEKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAERFKF--ATQRFQNGIA 421 Query: 441 DLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGG 480 L VLD QR L AQ L Q++L RL V LY++LGGG Sbjct: 422 SSLDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGG 461 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 142/416 (34%), Positives = 217/416 (52%), Gaps = 12/416 (2%) Query: 78 WWKQFGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGATR--- 134 WW+ F +EL+ L ++ +N + A +RV QA+AQA +A + P +G AG+ R Sbjct: 58 WWEIFRDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRT 117 Query: 135 --EMPISGGTPTNTA------NASLQVSYEIDFWGKNRAGVEAAEATLRANRYDQQTVAL 186 E P++ N++ NA+ VSYE+D +G+ R E A AT + + D + L Sbjct: 118 SAERPLTNYNSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENTRL 177 Query: 187 TVTSGIVSTYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALAN 246 +T+ + + YL + +++ +Q + + L + A+ GAAS LDL +Q+ A Sbjct: 178 VLTAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTAA 237 Query: 247 QRQLIPDLQQQEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDI 306 + + LQ Q Q A+A L+G P +FK+ LA P I P+ LL RRPDI Sbjct: 238 TQTQLTLLQDQRARYQNAIATLVGVPAPDFKLPVN-LAVTTAPAIPLTAPAALLERRPDI 296 Query: 307 RRAEANLAAANANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGASLIAPIF 366 AE +AAANA + VAR+A FPS+ L+G G+ ++ L +LF P L S+G S IF Sbjct: 297 AAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQMIF 356 Query: 367 DGGNLRNQQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARF 426 DGG A+A ++ + YRQ V+ ++ EV+ L + +L + D A Sbjct: 357 DGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADSADR 416 Query: 427 AFELAEIRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 482 + L+ RY++G L V+ Q+T + Q Q+ QRL TV L KALGGGW Sbjct: 417 SLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGWH 472 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.129 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 927,100 Number of extensions: 35120 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 15 Length of query: 496 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 409 Effective length of database: 899,382 Effective search space: 367847238 Effective search space used: 367847238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)