BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3400.p
         (323 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980241|ref|YP_001352883.1| thymidylate synthase [Janthinob...   557   e-160

>gi|152980241|ref|YP_001352883.1| thymidylate synthase
           [Janthinobacterium sp. Marseille]
          Length = 324

 Score =  557 bits (1435), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 253/324 (78%), Positives = 293/324 (90%), Gaps = 1/324 (0%)

Query: 1   MKQYQDLIQDVLENGSWQDNRTGIRTLSIPGAMMRFDLQK-GFPAVTTKRLAFKSVVGEL 59
           MKQY DL++ VL+ G+WQ+NRTGIRT+SIPGAM+RFDLQK GFPA+TTKRLAFKSV+GEL
Sbjct: 1   MKQYLDLVRTVLDTGTWQENRTGIRTISIPGAMLRFDLQKDGFPAITTKRLAFKSVIGEL 60

Query: 60  CGFLRATRSAADFRALGCKVWDQNANENADWLANPFRTGSDDLGPVYGVQWRQWPAYKLI 119
            GFLRATRSAA+FR LGCKVWDQNANEN +WL NP+RTG DDLGPVYGVQWRQWPAYKL+
Sbjct: 61  IGFLRATRSAAEFRELGCKVWDQNANENTEWLNNPYRTGPDDLGPVYGVQWRQWPAYKLL 120

Query: 120 DAAQSAQIEAARAKGFALVSTLQDEGVDKVLLYKAVDQLRECLDTIVKNPGSRRILFHGW 179
           DA Q AQI+ A+ +GF +VST+ DEG DKVLLYKA+DQLR+CLDTI+KNPGSRRILFHGW
Sbjct: 121 DADQQAQIDDAQKRGFRVVSTVNDEGKDKVLLYKAIDQLRDCLDTIIKNPGSRRILFHGW 180

Query: 180 NCAVLDEIALPACHLLYQFLPNQSTGEISLCLYVRSNDIGLGTPFNLAEGAALLHLVARL 239
           NCA LD IALPACHLLYQF+PN +T EISLCLY+RSNDIGLGTPFNLAE AALLH+V RL
Sbjct: 181 NCADLDAIALPACHLLYQFIPNATTKEISLCLYIRSNDIGLGTPFNLAEAAALLHVVGRL 240

Query: 240 TGYQPRWFSYFVGDAHIYENHIDMVKEQLTRAPYPLPQLAIAERVPEFAKTGQYAPQWLE 299
           TGY P+WF+YF+GDAHIYENH+DM+ EQ+TRAP+P PQL +++R+P+FA TG+Y P+WLE
Sbjct: 241 TGYTPKWFTYFIGDAHIYENHLDMLNEQMTRAPHPAPQLVLSDRIPDFAVTGKYEPEWLE 300

Query: 300 LIEPSDFSLLNYQHHAPLTAPMAV 323
            +EP DFSL NYQHHAPLTAPMAV
Sbjct: 301 KLEPGDFSLENYQHHAPLTAPMAV 324


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 755,967
Number of extensions: 29493
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 240
Effective length of database: 914,170
Effective search space: 219400800
Effective search space used: 219400800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)