BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3398.p
         (310 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983308|ref|YP_001354780.1| 3-hydroxyacyl-CoA dehydrogenase...    59   5e-10

>gi|152983308|ref|YP_001354780.1| 3-hydroxyacyl-CoA dehydrogenase
           oxidoreductase protein [Janthinobacterium sp. Marseille]
          Length = 795

 Score = 58.5 bits (140), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 27/248 (10%)

Query: 4   KIAVIGAGLIGRAWAIVFARAGFEVALWDAVPPALQGCQQ--LLR--ENLADLAAHGLIA 59
           K+AV+GAG++G   A     A   V L+D   PA  G +   +LR  ENL  L+      
Sbjct: 8   KVAVLGAGVMGAQIAAHCINAKVPVILFDL--PAKDGNKNGIVLRAIENLKKLSP----- 60

Query: 60  EPPQALLDRIHRAASLEQA--------LQDAILAQENVKETVEVKREIFAEMDRLAAPDT 111
               A L  +  AA +E A        L+D  L  E + E ++ K +++ ++      +T
Sbjct: 61  ----APLANVDYAAQIEVANYEDDLAKLKDCDLIIEAIAERMDWKHDLYKKVAPHIGANT 116

Query: 112 ILTSSTSWIPTSAFSEHLPG--RARILVAHPVNPPYLVPLVELAPAPWTAPDTVTRAKQI 169
           I  S+TS +  +A SE      +AR    H  NPP  + LVEL P   T P+ + + +  
Sbjct: 117 IFASNTSGLSITALSEGFAADLKARFCGVHFFNPPRYMHLVELIPTVATKPEILDQLEGF 176

Query: 170 YARAGQSPVVLNKEITGFLLNRIQGAVLNEALNLYENGYASAEDIDKVFKHGLGLRWSFM 229
                   VV   +   F+ NR+    +   ++  E    + + +D +    LG   S  
Sbjct: 177 LTSTLGKGVVRAFDTPNFIANRVGIFGMLATMHEAEKFGLTVDVVDDLTGSKLGRAKS-- 234

Query: 230 GPFETIDL 237
           G F T D+
Sbjct: 235 GTFRTADV 242


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 768,808
Number of extensions: 31898
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 227
Effective length of database: 914,170
Effective search space: 207516590
Effective search space used: 207516590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)