BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3397.p (261 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 134 4e-33 gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 112 3e-26 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 100 7e-23 gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family ... 95 4e-21 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 84 7e-18 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 134 bits (338), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 143/257 (55%), Gaps = 9/257 (3%) Query: 5 LKDQKVIVTAGAQGIGLAITAAFVEAGAHVHIC---DISE--DFLASARERFGTAPVSYS 59 L + +VT GIGL I A + GA + + D +E A+ +G V + Sbjct: 6 LHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQAALMRNYGVKCVHHP 65 Query: 60 RTDVSRASEVDAMFAELAQRWDGRLDVLVNNAGIAGPTLPVEEVDLSGWDQTIAVNLTGP 119 D+S+ +E++AM A AQ++ GR+D+LVNNAGI T +E+ + WD IA+NL+ Sbjct: 66 -ADMSKPAEIEAMMAFAAQQF-GRVDILVNNAGIQ-HTETIEDFPVEKWDAIIAINLSSA 122 Query: 120 FLCTRRAVPMLKNNGGGAIVNISSVAGRLGFALRTPYSASKYGVIGLTETWAIELGPCNI 179 F TR A+PM++ G I+NI+SV G +G ++ Y A+K+G++GLT+ A+E+ I Sbjct: 123 FHTTRLALPMMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAHTGI 182 Query: 180 RVNAVLPGIVAGARQERIVAAKATAYGIAHEEMRQRLLS-KVSLRKMVTAEDVANQVIFI 238 NA+ PG V ++ V A+A G++ E ++ L+S K + VT + + +F+ Sbjct: 183 TCNAICPGWVLTPLVQKQVDARAAREGLSDEAAKKDLVSEKQPSGEFVTPQQLGALAVFL 242 Query: 239 CSPAGASISGRSLSVCG 255 CS A + G + ++ G Sbjct: 243 CSEAAVQVRGAAWNMDG 259 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 112 bits (279), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 127/249 (51%), Gaps = 13/249 (5%) Query: 10 VIVTAGAQGIGLAITAAFVEAGAHVHICDISEDF---LASARERFGTAPVSYSRTDVSRA 66 V++T GIG A AF G V + E+ LA+ G + DV Sbjct: 35 VLITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGN-EAEFLLADVRFE 93 Query: 67 SEVDAMFAELAQRWDGRLDVLVNNAGIAGPTLPVEEVDLSGWDQTIAVNLTGPFLCTRRA 126 ++V + + R+ GR+DV VNNAG G P+ E + + +T VN+ G L + Sbjct: 94 ADVRNLVEQTVVRF-GRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTMLSLKHE 152 Query: 127 VPMLKNNGGGAIVNISSVAGRLGFALRTPYSASKYGVIGLTETWAIELGPCNIRVNAVLP 186 + ++ G G+I+N+SSVAG++G A + Y ASK+ V GLT++ A+E +RVNAV P Sbjct: 153 MRVMLAQGSGSIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVRVNAVAP 212 Query: 187 GIVAGARQERIVAAKATAYGIAHEEMRQRLLSKVSLRKMVTAEDVANQVIFICSPAGASI 246 G VA +R V EE + L+ + + T +++A ++F+ S + + Sbjct: 213 GPVATEMLDRFVGGS--------EENKAGFLATIPAGRAATPDEIAQTIVFLASDKVSYL 264 Query: 247 SGRSLSVCG 255 +G+S++V G Sbjct: 265 TGQSIAVDG 273 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 100 bits (250), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 82/253 (32%), Positives = 121/253 (47%), Gaps = 14/253 (5%) Query: 3 LNLKDQKVIVTAGAQGIGLAITAAFVEAGAHVHICDISEDFLASARERFGTAPVSYSRTD 62 ++L Q +VT ++GIG AI + GA V SE A+ E G D Sbjct: 4 VDLSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVV-LD 62 Query: 63 VSRASEVDAMFAELAQRWDGRLDVLVNNAGIAGPTLPVEEVDLSGWDQTIAVNLTGPFLC 122 V+ A+ A+ E+ Q+ G + +LVNNAGI L + D WD IA NLT Sbjct: 63 VNDAARSVALIDEI-QKEFGAVSILVNNAGITQDQLAMRMKDEE-WDSVIATNLTAVGRL 120 Query: 123 TRRAVPMLKNNGGGAIVNISSVAGRLGFALRTPYSASKYGVIGLTETWAIELGPCNIRVN 182 +R + + G I+NI+SV G G A + Y+A+K GV G++ A E+G NI VN Sbjct: 121 SRAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVN 180 Query: 183 AVLPGIVAGARQERIVAAKATAYGIAHEEMRQRLLSKVSLRKMVTAEDVANQVIFICSPA 242 + PG + + + E+ LL +V L ++ ED+A V F+ SP Sbjct: 181 CIAPGFIDTDMTKTL-----------SEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQ 229 Query: 243 GASISGRSLSVCG 255 + I+G +L V G Sbjct: 230 ASYITGTTLHVNG 242 >gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family protein [Janthinobacterium sp. Marseille] Length = 248 Score = 95.1 bits (235), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 128/262 (48%), Gaps = 26/262 (9%) Query: 1 MDLNLKDQKVIVTAGAQGIGLAITAAFVEAGAHVHICDISEDFLASARERFGTAPVSYSR 60 M +L+++ +I+T IG A V AGA++ + D+ + SA+ + + Sbjct: 1 MTHSLRNKTIIITGAGGNIGHAYCDGLVAAGANIVMADLQD---LSAQAQAYGQQAIAMK 57 Query: 61 TDVSRASEVDAMFAELAQRWDGRLDVLVNNAGI-------AGPTLPVEEVDLSGWDQTIA 113 DVS + ++ M A+ GR+D ++NNAG + +P++E WD+ Sbjct: 58 IDVSDPASIE-MMAKQTHAHFGRIDGIINNAGFFKGCSFGSFMDIPIDE-----WDRCYE 111 Query: 114 VNLTGPFLCTRRAVPMLKNNGGGAIVNISSVAGRLGFALRTPYSASKYGVIGLTETWAIE 173 +N+ G +LC R P ++ G G I+N+SS G Y +SK +IGLT + A E Sbjct: 112 INVRGVWLCCRAVFPYMREQGSGKIINVSSNTPYKGVPNFLHYVSSKAAIIGLTRSLARE 171 Query: 174 LGPCNIRVNAVLPGIVAGARQERIVAAKATAYGIAHEEMRQRLLSKVSLRKMVTAEDVAN 233 +G NI+ N + P ++ A I+A + + +A E R ++ L++ T D+ Sbjct: 172 VGAHNIQANTLCPDLIPDA---DILAKQGS---VADE----RTIAGRCLQRSQTPHDMVG 221 Query: 234 QVIFICSPAGASISGRSLSVCG 255 +F+ S I+G+SL V G Sbjct: 222 AALFLLSDGSDFITGQSLLVNG 243 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 84.3 bits (207), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 16/175 (9%) Query: 82 GRLDVLVNNAGIAGPTLPVEEVDLSGWDQTIAVNLTGPFLCTRRAVPMLKNNGGGAIVNI 141 GR+D+LVNNAG+ PVE+ L +D+T+AVN+ F+ T+ A + GG I+ I Sbjct: 86 GRIDILVNNAGVL-ALAPVEDFKLEDFDRTVAVNVRSVFVATQEAARHMGE--GGRIITI 142 Query: 142 SSV-AGRLGFALRTPYSASKYGVIGLTETWAIELGPCNIRVNAVLPGIVAGARQERIVAA 200 S A R+ FA Y+ SK ++GLT+ A +LGP I VN V PG V Sbjct: 143 GSTNADRMPFAGGAVYAMSKAAIVGLTKGLARDLGPRGITVNNVQPGPV----------- 191 Query: 201 KATAYGIAHEEMRQRLLSKVSLRKMVTAEDVANQVIFICSPAGASISGRSLSVCG 255 T A+ + L +++ + E++A+ V ++ P I+G SL++ G Sbjct: 192 -DTDMNPANSDFADTLKGLMAIGRYGKDEEIASFVAYLAGPEAGYITGASLTIDG 245 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 586,585 Number of extensions: 24134 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 21 Length of query: 261 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 180 Effective length of database: 921,564 Effective search space: 165881520 Effective search space used: 165881520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)