BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3396.p (843 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 188 1e-48 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 186 7e-48 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 175 1e-44 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 174 2e-44 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 168 1e-42 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 188 bits (478), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 95/243 (39%), Positives = 149/243 (61%) Query: 347 VVLEAKDIEIRFGGIQAVSNAQIALHAGEIHALIGPNGAGKTTTFNLISGMFAPHGGSVL 406 + LE +++ RFG + + A + L G+ ALIGPNGAGK+T FNLISG F G +L Sbjct: 4 LALELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDIL 63 Query: 407 LNGEPIHGLPPSDICQRGLARSFQITNLFKGLSIYENLRLSLQARHPGRYNMWRDIDSYP 466 LNG I G P I +RGL+RSFQITN+F LS++ENLR ++ RY+ W+ ++ Sbjct: 64 LNGSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLNGLQ 123 Query: 467 EIHAETDALMRFLGLKGIDDIQGGALSYGGQRLVDLGIALGSKPQVLLMDEPLAGLAAAE 526 +++ + +M +GL +++ LSY QR +++GI + QVLL+DEP AG++ +E Sbjct: 124 DVNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAGMSRSE 183 Query: 527 RERVSRLVQIIAANIPVLIVEHDIDRVLGFSHQVTVMNQGSVLMTGTPEQARADQRVQEI 586 + L++ I+A +L+VEHD+D V G + ++ V+ G ++ TP+ R + VQ+ Sbjct: 184 SDAAVELIRKISAGKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNIRNNPLVQQA 243 Query: 587 YTG 589 Y G Sbjct: 244 YLG 246 Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 10/222 (4%) Query: 610 LAFEQVNAFYGKSHILNDASLDVRQGEIVALLGRNGAGKSTLLKTLTGLLKPASGAIHYQ 669 L +V +G + I+ ASL + QG+ +AL+G NGAGKSTL ++G +SG I Sbjct: 6 LELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILLN 65 Query: 670 GRDIAGLAAPEIARLGIGYVPQGRGLFAGMTVAENLALGRL---------ARKTDGSDGV 720 G IAG +I R G+ Q +F ++V ENL L ++ +G V Sbjct: 66 GSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLNGLQDV 125 Query: 721 AWSEEQILHYFPRLKERLHTHADFLSGGEQQMVAVARALSGNVKLLLLDEPFEGLAPAVV 780 EQ++ L +R + AD LS EQ+ + + ++G ++LLLDEP G++ + Sbjct: 126 NQRAEQVMEEIG-LHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAGMSRSES 184 Query: 781 QELFKVFDQLRREISIVIVEHNLDLVLALADRVFALERGAVF 822 ++ ++ ++++VEH++D+V LADR+ L G + Sbjct: 185 DAAVELIRKISAGKTLLMVEHDMDVVFGLADRIAVLVYGEII 226 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 186 bits (471), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 150/236 (63%), Gaps = 11/236 (4%) Query: 609 LLAFEQVNAFYGKSHILNDASLDVRQGEIVALLGRNGAGKSTLLKTLTGLLKPASGAIHY 668 LL + ++AFYGKSH+L+ + ++ GEIV+LLGRNGAG+ST +K G++ A+G I + Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMV-AATGTIRF 62 Query: 669 QGRDIAGLAAPEIARLGIGYVPQGRGLFAGMTVAENLALGRLARKTDGSDGVAWSEEQIL 728 +G++I GL IAR G+GYV + R +F ++VA+NL LG A+ WS + + Sbjct: 63 KGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQAKSR-------WSADDMY 115 Query: 729 HYFPRLKERLHTHADFLSGGEQQMVAVARALSGNVKLLLLDEPFEGLAPAVVQELFKVFD 788 FPRL+ER H A LSGGEQQM+A+ R L G+ +L+++DEP EGLAP +V + Sbjct: 116 RLFPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQ 175 Query: 789 QL-RREISIVIVEHNLDLVLALADRVFALERGAVFHTGPAQPLLTDLAYRKQILWL 843 +L +R +S++++E L + L ++ RV+ + G V G Q L D A R++ WL Sbjct: 176 ELVQRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQE--WL 229 Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 17/243 (6%) Query: 348 VLEAKDIEIRFGGIQAVSNAQIALHAGEIHALIGPNGAGKTTTFNLISGMFAPHGGSVLL 407 +LE K++ +G + I + +GEI +L+G NGAG++TT GM A G++ Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAAT-GTIRF 62 Query: 408 NGEPIHGLPPSDICQRGLARSFQITNLFKGLSIYENLRLSLQARHPGRYNMWRDIDSYPE 467 G+ I GLP I ++GL + +F LS+ +NL L QA+ + W D Y Sbjct: 63 KGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQAK-----SRWSADDMYR- 116 Query: 468 IHAETDALMRFLGLKGIDDIQGGALSYGGQRLVDLGIALGSKPQVLLMDEPLAGLAAAER 527 F L+ +Q G LS G Q+++ L L P+++++DEP GLA Sbjct: 117 ---------LFPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMV 167 Query: 528 ERVSRLVQ-IIAANIPVLIVEHDIDRVLGFSHQVTVMNQGSVLMTGTPEQARADQRVQEI 586 V+ +Q ++ + VL++E + L S +V VM G V+ G+P+ +AD V++ Sbjct: 168 ALVANFLQELVQRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQE 227 Query: 587 YTG 589 + G Sbjct: 228 WLG 230 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 136/227 (59%), Gaps = 5/227 (2%) Query: 609 LLAFEQVNAFYGKSHILNDASLDVRQGEIVALLGRNGAGKSTLLKTLTGLLKPASGAIHY 668 +L Q+N +YG +H L SL V +G+ ++LLGRNG GK+TLLK L G+L A+G + Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 669 QGRDIAGLAAPEIARLGIGYVPQGRGLFAGMTVAENLALGRLARKTDGSDGVAWSEEQIL 728 GRDI L + A LGI YVPQGR +FA +TV ENL +G +A K+ V E + Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMG-MATKSGKKASVIKGE--VY 117 Query: 729 HYFPRLKERLHTHADFLSGGEQQMVAVARALSGNVKLLLLDEPFEGLAPAVVQELFKVFD 788 FP LKE LH LSGG+QQ +A+ARAL KL++LDEP EG+ P++++++ +V Sbjct: 118 ELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVIS 177 Query: 789 QLRR--EISIVIVEHNLDLVLALADRVFALERGAVFHTGPAQPLLTD 833 LR +I I++ E D LAD L RG V +G Q + D Sbjct: 178 LLRERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDD 224 Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 113/236 (47%), Gaps = 13/236 (5%) Query: 348 VLEAKDIEIRFGGIQAVSNAQIALHAGEIHALIGPNGAGKTTTFNLISGMFAPHGGSVLL 407 +L+ + +G + +++ G+ +L+G NG GKTT + G+ G+V L Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 408 NGEPIHGLPPSDICQRGLARSFQITNLFKGLSIYENLRLSLQARHPGRYNMWRDIDSYPE 467 +G I L P G+A Q +F L++ ENL + + + + ++ Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASV--------- 111 Query: 468 IHAETDALMRFLGLKGIDDIQGGALSYGGQRLVDLGIALGSKPQVLLMDEPLAGLAAAER 527 I E L F LK + +GG LS G Q+ + + AL ++P+++++DEP G+ + Sbjct: 112 IKGEVYEL--FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSII 169 Query: 528 ERVSRLVQII--AANIPVLIVEHDIDRVLGFSHQVTVMNQGSVLMTGTPEQARADQ 581 + + R++ ++ +I +L+ E D + V+++G V+ +G+ ++ D Sbjct: 170 KDIGRVISLLRERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDDN 225 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 146/251 (58%), Gaps = 10/251 (3%) Query: 349 LEAKDIEIRFGGIQAVSNAQIALHAGEIHALIGPNGAGKTTTFNLISGMFAPHGGSVLLN 408 LE + + +R G+ AV NA + AG+I +LIGPNGAGKTTT+N+ISG P G V L Sbjct: 10 LELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLF 69 Query: 409 GEPIHGLPPSDICQRGLARSFQITNLFKGLSIYENLRLSLQARHPG-------RYNMWRD 461 G I G+ P I Q GL RSFQ T++F ++ EN+ +L + R +R Sbjct: 70 GHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRTQKFRR 129 Query: 462 IDSYPEIHAETDALMRFLGLKGIDDIQGGALSYGGQRLVDLGIALGSKPQVLLMDEPLAG 521 ++ ++ + + L+ FLGL + LSYG QRL+ +G+AL +KP+VLL+DEP AG Sbjct: 130 EEA--DLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAG 187 Query: 522 LAAAERERVSRLVQIIA-ANIPVLIVEHDIDRVLGFSHQVTVMNQGSVLMTGTPEQARAD 580 L +E E +V+ I + + VL+VEHD+ V+ S + V+N G ++ TG+P + + D Sbjct: 188 LNPSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQND 247 Query: 581 QRVQEIYTGHG 591 V Y G G Sbjct: 248 PEVIRAYLGSG 258 Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 22/227 (9%) Query: 625 LNDASLDVRQGEIVALLGRNGAGKSTLLKTLTGLLKPASGAIHYQGRDIAGLAAPEIARL 684 +++AS V G+IV+L+G NGAGK+T ++G +KP SG + G DI G+A +I++L Sbjct: 25 VDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLFGHDITGMAPEQISQL 84 Query: 685 GIGYVPQGRGLFAGMTVAENL--------------ALGRLARKTDGSDGVAWSEEQILHY 730 G+ Q +F+ TVAEN+ AL R +K + ++ L Sbjct: 85 GLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLR-TQKFRREEADLRTQANDLLA 143 Query: 731 FPRLKERLHTHADFLSGGEQQMVAVARALSGNVKLLLLDEPFEGLAPAVVQELFKVFDQL 790 F L R +T A LS GEQ+++ V AL+ K+LLLDEP GL P+ E FK + + Sbjct: 144 FLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAGLNPSET-EAFK--EMV 200 Query: 791 RR----EISIVIVEHNLDLVLALADRVFALERGAVFHTGPAQPLLTD 833 RR +++++VEH++ +V++++D + L G + TG + D Sbjct: 201 RRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQND 247 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 141/236 (59%), Gaps = 5/236 (2%) Query: 609 LLAFEQVNAFYGKSHILNDASLDVRQGEIVALLGRNGAGKSTLLKTLTGLLKPA--SGAI 666 +L + YG + L+V +GE++ L+G NGAGK+T LK +TG L G I Sbjct: 5 VLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRVEGHI 64 Query: 667 HYQGRDIAGLAAPEIARLGIGYVPQGRGLFAGMTVAENLALGRLARKTDGSDGVAWSEEQ 726 Y G+ I GL + E+ R + VP+GRG+F M++ ENL +G R D DG+A ++ Sbjct: 65 EYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTR--DDKDGIAADIDK 122 Query: 727 ILHYFPRLKERLHTHADFLSGGEQQMVAVARALSGNVKLLLLDEPFEGLAPAVVQELFKV 786 FPRLKER A LSGGEQQM+A+ARAL + +LLLLDEP GL+P +V+++F+V Sbjct: 123 WFGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIFEV 182 Query: 787 FDQLRRE-ISIVIVEHNLDLVLALADRVFALERGAVFHTGPAQPLLTDLAYRKQIL 841 + + I+I++VE N L L A+R + +E G V G AQ +L+D R+ L Sbjct: 183 IRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAYL 238 Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 15/249 (6%) Query: 347 VVLEAKDIEIRFGGIQAVSNAQIALHAGEIHALIGPNGAGKTTTFNLISGMFAPHG---G 403 VL+ +++ +GGI+AV + +H GE+ LIG NGAGKTTT I+G P+ G Sbjct: 4 TVLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTL-PNCRVEG 62 Query: 404 SVLLNGEPIHGLPPSDICQRGLARSFQITNLFKGLSIYENLRLSLQARHPGRYNMWRDID 463 + G+PI GL ++ ++ LA + +F +SI ENL + R + + DID Sbjct: 63 HIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDD-KDGIAADID 121 Query: 464 SYPEIHAETDALMRFLGLKGIDDIQGGALSYGGQRLVDLGIALGSKPQVLLMDEPLAGLA 523 + + F LK G LS G Q+++ + AL S P++LL+DEP GL+ Sbjct: 122 KWFGV---------FPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLS 172 Query: 524 AAERERVSRLVQIIAAN-IPVLIVEHDIDRVLGFSHQVTVMNQGSVLMTGTPEQARADQR 582 E++ +++ ++A I +L+VE + L +++ VM G V M G +Q +D + Sbjct: 173 PIMVEKIFEVIRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPK 232 Query: 583 VQEIYTGHG 591 V+E Y G G Sbjct: 233 VREAYLGEG 241 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,935,832 Number of extensions: 83598 Number of successful extensions: 749 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 580 Number of HSP's successfully gapped: 119 Length of query: 843 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 752 Effective length of database: 884,594 Effective search space: 665214688 Effective search space used: 665214688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 134 (56.2 bits)