BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3395.p (291 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 136 2e-33 gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC t... 129 2e-31 gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t... 124 7e-30 gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino a... 103 1e-23 gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC t... 99 4e-22 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 160/290 (55%), Gaps = 11/290 (3%) Query: 6 LLEQILNGLLVGGYYLLIALGLSLIFSLGGIVNLAHGAFYAIGAYLAVEITRHLG--FAG 63 LL+ LN L++G Y L+ +GL+LIF + +VN AHG YA+GAY+A + G F G Sbjct: 4 LLQHTLNALVLGSTYALLGIGLTLIFGIMRVVNFAHGELYALGAYVAYGVVAMFGMNFFG 63 Query: 64 AVVLSPLLVALLGILFERFLLRR--FYSADPILGLLLTFGLSMVAEQAIRILWGASPLPA 121 +++++ ++ L G E FLLRR + D ++ L+ G+ ++ + A ++WG + Sbjct: 64 SLIVAAIVGFLFGTAIEYFLLRRRDLKAIDEVM--LIMIGVMIIMQNAELLMWGG--VAK 119 Query: 122 SIPPAFKGQLMV-GDFMYSRYRLLMLAIVLAALTLIWLLLNKTSFGRVVRAGVQKPDMVA 180 S+P F + +V G S RL +L LA L + +LL+ ++ G +RA Q D Sbjct: 120 SVPSPFSQEPIVWGAISVSPIRLFVLVTALALLVIFYLLIERSRLGLAMRATFQDKDAAK 179 Query: 181 VLGIGLQPYMTAIVMLGVGLAALAGVLFAPISGVQPAMGAEIMTAAFVVVVIGGLGSFWG 240 ++G+ + T LG LA++AG L AP+ V P MG AF +V++GGLG+ G Sbjct: 180 IVGVNVSHVYTLTFALGSCLASVAGALLAPVFVVTPTMGDLASLKAFAIVILGGLGNLPG 239 Query: 241 VVLAAVLVGVVRGITIQFYAPAGEASM-YLLMLLVLIFRPRGLLGERIER 289 L ++ +V + + A ++ +L++L V+IFRP+GL R ER Sbjct: 240 AALGGFILAIVEEFGAGYISTAYRDALGFLVILAVMIFRPQGLFTIR-ER 288 >gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 315 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 120/218 (55%), Gaps = 7/218 (3%) Query: 5 FLLEQILNGLLVGGYYLLIALGLSLIFSLGGIVNLAHGAFYAIGAYLAVEITRHLGFAGA 64 F L +LNGL G +++ GL+LIFS+ G++N AH +FY IGAY A I+ +GF A Sbjct: 3 FTLISLLNGLSYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMIGAYFAYSISNAIGFWPA 62 Query: 65 VVLSPLLVALLGILFERFLLRRFYSADPILGLLLTFGLSMVAEQAIRILWGASPLPASIP 124 +VL+PL V LLG L ERF LR + I LL TFGLS V + ++++WG +P SIP Sbjct: 63 LVLAPLAVGLLGALVERFGLRAVHKYGKIPELLFTFGLSYVIVELVQLIWGRVAVPYSIP 122 Query: 125 PAFKGQLMVGDFMYSR----YRLLMLAIVLAALTLIWLLLNKTSFGRVVRAGVQKPDMVA 180 P +G L +Y+ YR M+ + + L I+ L +T G V++A + P MV Sbjct: 123 PELQGSLFT---LYTTTFPIYRGFMMLVAILMLAAIYFTLTRTRIGLVIQAALTHPQMVE 179 Query: 181 VLGIGLQPYMTAIVMLGVGLAALAGVLFAPISGVQPAM 218 LG + + G LA LAGV+ +P M Sbjct: 180 ALGHNVPRVFMWVFAGGCALAGLAGVIGGNAFVTEPNM 217 >gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 293 Score = 124 bits (311), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 152/287 (52%), Gaps = 15/287 (5%) Query: 10 ILNGLLVGGYYLLIALGLSLIFSLGGIVNLAHGAFYAIGAYLAVEITR---------HLG 60 +L G+ L+A GL LIF + I+NLA G+ YA+GAY + +T HL Sbjct: 8 LLAGIFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLPVHL- 66 Query: 61 FAGAVVLSPLLVALLGILFERFLLRRFYSADPILGLLLTFGLSMVAEQAIRILWGASP-- 118 F ++ + +++ L+GI ER L+R Y+ LLLTF + ++ + +R WGA P Sbjct: 67 FPFVLLGAGIVIGLIGIPLER-LIRTIYNRPESFQLLLTFAVMLMFQDVLRFFWGADPQQ 125 Query: 119 LPASIPPAFKGQLMVGDFMYSRYRLLMLAIVLAALTLIWLLLNKTSFGRVVRAGVQKPDM 178 LP ++ F G M Y ++++A+ + + L KT G+++RA + + Sbjct: 126 LP-NVSMTFGTMSAFGVSM-PTYNVMVIAVAVTLAIGMAYFLGKTKTGKILRATAENRET 183 Query: 179 VAVLGIGLQPYMTAIVMLGVGLAALAGVLFAPISGVQPAMGAEIMTAAFVVVVIGGLGSF 238 A +GI + + LG L + G L P + MG E++ AF VVVIGGLGS Sbjct: 184 SAAMGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVVIGGLGSM 243 Query: 239 WGVVLAAVLVGVVRGITIQFYAPAGEASMYLLMLLVLIFRPRGLLGE 285 G + A++VG++R ++ +Y A ++Y ++L VLI++P GL G+ Sbjct: 244 KGAAVGALIVGLIRALSAMYYPEAEILAIYAIVLAVLIWKPAGLYGK 290 >gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 538 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/271 (32%), Positives = 137/271 (50%), Gaps = 23/271 (8%) Query: 29 LIFSLGGIVNLAHGAFYAIGAYLA--VEITRHLGFAGAVVLSPLLVAL---------LGI 77 + F L GI+N+AHG IGAY ++ F A+ + LLVAL +GI Sbjct: 265 ITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPEAID-AYLLVALPAAFIVAAAVGI 323 Query: 78 LFERFLLRRFYSADPILGLLLTFGLSMVAEQAIRILWGASPLPASIPPAFKGQLMV-GDF 136 ER ++R Y P+ LL T+G+S++ Q +R ++GA + + P G + V G Sbjct: 324 ALERLVIRWLYGR-PLETLLCTWGISLILMQGVRSIFGAQNVEVANPSWMSGGVTVLGSL 382 Query: 137 MYSRYRLLMLAIVLAALTLIWLLLNKTSFGRVVRAGVQKPDMVAVLGIGLQPYMTAIVML 196 + S R++++ L + +WL+LNKT G VRA +Q M A +G+ L Sbjct: 383 VLSYNRIVIIFFALFVVLAVWLILNKTRLGLFVRAVMQNRRMAACVGVSTGKIDMMTFGL 442 Query: 197 GVGLAALAGVLFAPISGVQPAMGAEIMTAAFVVVVIGGLGSFWGVVLAAVLVGVVRGITI 256 G G+A L GV + + V P +G + +F+VVV+GG+G G V+AA +G V Sbjct: 443 GCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQLAGTVIAAFGLGEVN---- 498 Query: 257 QFYAPAGEASMYLLMLLVLIF-----RPRGL 282 +F P A + + +LV I RP+GL Sbjct: 499 KFLEPVAGAVLAKIAILVFIIIFIQKRPQGL 529 >gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 98.6 bits (244), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 160/303 (52%), Gaps = 24/303 (7%) Query: 7 LEQILNGLLVGGYYLLIALGLSLIFSLGGIVNLAHGAFYAIGAYLAVEITRHLGFAGAVV 66 ++QI+NGL++G Y L+ALG ++++ + ++N AHG IGA + I + L + Sbjct: 5 IQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTVAPDL 64 Query: 67 --LSPLLVALLG---------ILFERFLLRRFYSADPILGLLLTFGLSMVAEQAIRILWG 115 + L++A+LG +L ER RR +A + L+ G+S++ + ++WG Sbjct: 65 PGIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTLAMMIWG 124 Query: 116 ASPLPASIPPAFKGQ-LMVGDFMYSRYRLLMLAIVLAALTLIWLLLNKTSFGRVVRAGVQ 174 SP+P P + L + + S ++++L + A+ L+ LL+ KT GR +RA + Sbjct: 125 RSPIP--FPQEMPTEPLHIMGALISPTQVMLLILAAVAMGLLVLLIEKTRMGRAMRATSE 182 Query: 175 KPDMVAVLGIGLQPYMTAIVMLGVGLAALAGVLF-APISGVQPAMGAEIMTAAFVVVVIG 233 P + ++G+ + +G LAA+AGV++ A S Q AMG AF V+G Sbjct: 183 NPRVAGLMGVDSNRVIVMTFAIGAILAAIAGVMWAANYSSAQFAMGFVPGLKAFSAAVLG 242 Query: 234 GLGSFWGVVLAAVLVGVVRGITIQFY---------APAGEASMYLLMLLVLIFRPRGLLG 284 G+G+ +G +L +L+G++ + + + + ++++++VL RP G++G Sbjct: 243 GIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRPSGIMG 302 Query: 285 ERI 287 ER+ Sbjct: 303 ERV 305 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.332 0.148 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 455,727 Number of extensions: 13452 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 6 Length of query: 291 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 209 Effective length of database: 917,867 Effective search space: 191834203 Effective search space used: 191834203 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)