BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3394.p (433 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981476|ref|YP_001354873.1| ABC-type branched-chain amino a... 91 1e-19 gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino a... 83 4e-17 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 64 2e-11 gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-bin... 62 7e-11 gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino a... 62 7e-11 >gi|152981476|ref|YP_001354873.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 423 Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 104/393 (26%), Positives = 174/393 (44%), Gaps = 39/393 (9%) Query: 39 AAVLGFPAIVRAQSDKIIIGHLTPRTGFLGPMGEYAVMSINLAVEEQNKAGGLL----GR 94 A VL V ++ I IG + +G GE V ++ LA++ N GG+ Sbjct: 10 ATVLLCVCSVAQAAEPIRIGMIDGMSGAFANAGEAVVRNLQLAIDAVNARGGVRLPDGAH 69 Query: 95 QLTL-LSEDSVNPPTASTKAQRLLERDGAALLIGEISSASALGIA------QVAQRNKKL 147 L L + ++ + + +RL ++ ++ G S+ +A + Q A N+ L Sbjct: 70 PLALEIFDNKSGVEESLLEFKRLADQRIPFMVQGNSSAVAAALLDAVNKHNQRASDNRVL 129 Query: 148 FMNTGCNSDELRGKSCNKFMFHIEAANSTYVKACGQQLLHNGLIKGKKLYALTADYAFGH 207 F+N L + C+ + F +A + A + + + + K++Y + DY+FG Sbjct: 130 FLNYSAVDPALTNEKCSYWHFRFDANADMRMHALTEVIKRDA--RAKRVYLIGQDYSFGR 187 Query: 208 DLLRTAKTFVAAN--GGTIANDELVPT-DATDFSPYLLKIRQAKPDLVISNLAGNQITNF 264 + + A+T +AA I DEL P DF+PY+ KI+ + D VIS GN +T Sbjct: 188 LVAQAARTQLAAKRPDIQIVGDELHPIGKIKDFAPYIAKIKASGADAVISGNWGNDLTLL 247 Query: 265 IKQYAEFGLP---FPIAGFGFDTVAAWG-AGADNFAGTWPTTWHHDV-----DAPSAKAF 315 +K EFGL + G G AA G AG D WH +V D+ S + F Sbjct: 248 VKAAKEFGLNTKFYTFYGNGLGAPAAIGDAGVDRVRAV--AEWHPNVGDGMADSASGR-F 304 Query: 316 VSAFVKKYGKPPENQA-WGEYVGFRSIAQAIAETKSLDTMKLIEYFEKGAQIDILKGRKG 374 SAF ++Y +P ++ ++ +A AI + +S D + + E GA R Sbjct: 305 YSAFRQRYPQPKDDYVHLRMHIMIEMLATAIEKARSTDARAVAQALE-GAHY-----RNA 358 Query: 375 YY----RDWDHQLMQEMYTLSPKPKGRAKDQWD 403 ++ R DHQL+Q +Y + K ++D Sbjct: 359 FHDATMRASDHQLIQPLYVSVMRRKSDGGMRFD 391 >gi|152981674|ref|YP_001351789.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 431 Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 94/382 (24%), Positives = 160/382 (41%), Gaps = 40/382 (10%) Query: 18 PTDPTHPRSARRRRLLSAA---AGAAVLGFPAIVRAQSDKIIIGHLTPRTGFLGPMGEYA 74 P H S +RR +L AA +LG PA AQ+ + +G + PR G G +GE Sbjct: 4 PVSSVHVSSIQRRTVLKAAGVGVATGLLGMPAF--AQNKPLRVGIIAPRGGVAGTIGECG 61 Query: 75 VMSINLAVEEQNKAGGLLGRQLTLLSEDSVNPPTASTKAQRLLERDGAALLIGEISSASA 134 + + N AGG+ GR++ L+ ++ +P + ++L+ ++ + G +SS + Sbjct: 62 LRGVEWTTARINAAGGIGGRKVELVIQEETSPKDTIDRFRKLVLQEKVDCVQGIVSSGVS 121 Query: 135 LGIAQVAQ--RNKKLFMNTGCNSDELRGKSCN-KFMFHIEAANSTYVKACGQQLLHNGLI 191 L +A A+ R +F + G D ++ K++F + +A LL Sbjct: 122 LALAPAAEDSRMPTIFWD-GTTQDGVKETMPKPKYVFR---STDNECEAVMASLLAIKHF 177 Query: 192 KG--KKLYALTADYAFGHDLLRTAKTFVAANG--GTIANDELVPTDATDFSPYLLKIRQA 247 KG K++ + DY++G + + + G + +++ D + + ++ A Sbjct: 178 KGKFKRIACVNPDYSYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAA 237 Query: 248 KPDLVISNLAGNQITNFIKQYAEFGLP------FPIAGFGFDTVAAWGAGADNFAGTWPT 301 KPDL+ S+L + F+KQ GL P AG+ A F Sbjct: 238 KPDLIFSSLLFADLPVFMKQAHNAGLTEGTRFVLPAAGWQHT------AMKKEFTPE-GI 290 Query: 302 TWHHDV---DAPSA----KAFVSAFVKKYGKPPENQAWGEYVGFR----SIAQAIAETKS 350 W H+ D P A K FV + KY P +A Y + +A+A KS Sbjct: 291 VWGHNTMYFDDPKASATQKEFVKWYADKYKDYPHWEADRAYFSMMVYKAGVEKALAAKKS 350 Query: 351 LDTMKLIEYFEKGAQIDILKGR 372 T + I G QI+ L G+ Sbjct: 351 WPTPEEICAAIPGVQIESLGGK 372 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 7/247 (2%) Query: 30 RRLLSAAAGAAVLGFPAIVRAQSDKIIIGHLTPRTGFLGPMGEYAVMSINLAVEEQNKAG 89 ++ L+A G A+ F A + I IG P TG + G Y +A + N+ G Sbjct: 6 KKSLAACIGLAM--FAATSAYAQETIKIGVTEPLTGPVAAAGTYVTNGARIAADYVNQNG 63 Query: 90 GLLGRQLTLLSEDS-VNPPTASTKAQRLLERDGAALLIGEISSASALGIAQVAQRNKKLF 148 G+LG+++ L+ ED+ NP A ++L+ +D +L+G SS L I + Sbjct: 64 GVLGKKIQLVIEDNKSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEVPL 123 Query: 149 MNTGCNSDELRGKSCNKFMFHIEAANSTYVKACGQQL-LHNGLIKGKKLYALTADYAFGH 207 + +S ++ + N ++F ++ +A + + +N IK + D+ G Sbjct: 124 VVEAASSSKIT-TAGNPWVFRTSPTSAMEAQAFSKVIDGYNPAIKKADFLVVNNDWGLGA 182 Query: 208 DLLRTAKTFVAANGGTIANDELVPTDATDFSPYLLKIRQAKPDLVISNLAGNQITNFIKQ 267 + K + A G I E + D TD S L ++ + D V Q+T I+Q Sbjct: 183 AV--EFKKMLEAKGIAIGRTETMTPDMTDLSAQLAALKGSGSDTVFVTSGIEQLTLAIRQ 240 Query: 268 YAEFGLP 274 E LP Sbjct: 241 AGEQRLP 247 >gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-binding precursor signal peptide protein [Janthinobacterium sp. Marseille] Length = 410 Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 142/364 (39%), Gaps = 48/364 (13%) Query: 52 SDKIIIGHLTPRTGFLGPMGEYAVMSINLAVEEQNKAGGLLGRQLTLLSEDSVNPPTAS- 110 ++ + I + P +G P+G+ + S E N+ + ++ D+ P S Sbjct: 23 AENVRIAFIDPLSGPFAPVGQNLLHSFQTIAELSNQKQWGGSNTVEIVGFDNKGSPQESL 82 Query: 111 TKAQRLLERDGAALLIGEISSASALGIAQVAQRNKK------LFMNTGCNSDELRGKSCN 164 + + +++ + G S + I + + N++ LF+N L C+ Sbjct: 83 IQLKSAIDQGYRYITQGNGSGVALALIDAINKHNERNPGKEVLFLNHSAGDPALTNSKCS 142 Query: 165 KFMFHIEAANSTYVKACGQQLLHNGLIKGKKLYALTADYAFGHDLLRTAKTFVAAN--GG 222 + F +A + +++ + + IK K+Y + +YA G ++ R+ + ++ Sbjct: 143 FWHFRFDANSEMKMESLTTFMAKDPNIK--KIYVIGQNYALGQEISRSTRAYMGRKRPDV 200 Query: 223 TIANDELVPT-DATDFSPYLLKIRQAKPDLVISNLAGNQI-------------TNFIKQY 268 I D+L P DFSPY+ K++ + D +I+ G + NF Y Sbjct: 201 QIVGDDLHPIGQVKDFSPYVAKMKASGADTIITANWGADLALLVKAARDADLKANFYTLY 260 Query: 269 -AEFGLPFPIAGFGFDT---VAAWGAGADNFAGTWPTTWHHDVDAPSAKAFVSAFVKKYG 324 A G+P + G D VA W + +AG K + F KKY Sbjct: 261 AATTGVPTAMGAAGLDRVKYVAYWNLNNETYAG---------------KEIIEGFKKKYN 305 Query: 325 KPPENQAWGEYVGFRSIAQAIAETKSLDTMKLIEYFEKGAQIDILKGRKGYYRDWDHQLM 384 + A Y + +A E S D +K+ E G ++ L G R DHQ Sbjct: 306 D--DYYAMASYTVLAMLGKAFKEAGSTDPLKVALAME-GMKVKSLNGEVE-MRKSDHQAQ 361 Query: 385 QEMY 388 Q +Y Sbjct: 362 QPLY 365 >gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 381 Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 8/219 (3%) Query: 38 GAAVLGFPAIVRAQSDKIIIGHLTPRTGFLGPMGEYAVMSINLAVEEQNKAGGLL-GRQL 96 GA +L AQ + IGH+ P TG MG+ LAVEE N G ++ G+++ Sbjct: 12 GAVLLALAGSTLAQEQIVKIGHVGPVTGTDAHMGKDNENGARLAVEELNAKGVVINGKKV 71 Query: 97 TLL---SEDSVNPPTASTKAQRLLERDGAALLIGEISSASALGIAQVAQRNKKLFMNTGC 153 L +D+ +P A+ A +L++ + A++IG ++S + + +++ N + + Sbjct: 72 KLQYMPEDDAADPKQATAAATKLVDSN-VAVVIGHLNSGATIPASRI-YANAGIVQISPS 129 Query: 154 NSDELRGKSCNKFMFHIEAANSTYVKACGQQLLHNGLIKGKKLYALTADYAFGHDLLRTA 213 ++ + K F + A ++ + GQ + + + K + + A+G + Sbjct: 130 STSPKYTQQGFKTAFRVVANDAQLGRVLGQYAVKS--LAAKNVAVIDDRTAYGQGVAEEF 187 Query: 214 KTFVAANGGTIANDELVPTDATDFSPYLLKIRQAKPDLV 252 V A GGT+ + ATDF+ L I+ KPD++ Sbjct: 188 AKGVKAAGGTVVASQYTNNKATDFNAILTAIKAKKPDVI 226 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 928,733 Number of extensions: 37948 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 5 Length of query: 433 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 347 Effective length of database: 903,079 Effective search space: 313368413 Effective search space used: 313368413 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)