BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3393.p
         (234 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980771|ref|YP_001354254.1| GntR family transcriptional reg...    65   5e-12
gi|152981662|ref|YP_001352127.1| GntR family transcriptional reg...    64   7e-12

>gi|152980771|ref|YP_001354254.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 229

 Score = 64.7 bits (156), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 5/188 (2%)

Query: 19  TLSERVYQDLCELIQAGQVRPGQKLTLKGLSDALGTSPMPVREAVRQLAAEGALEILPNR 78
           T SE + + + E+I  G ++PGQ L    L++  G S  P+REA+ QLA+ G + I P R
Sbjct: 13  TRSETLREQIEEMIAVGTLKPGQHLDETVLAERFGVSRTPIREALIQLASMGIVVIRPRR 72

Query: 79  AMRVPLMTKGKFRELLKIRLALEGLAAEHAARHIDAAALEEVARLHEDLSVEMKRKKPNV 138
              V  +   +  E+ ++   LE + A  AAR +  A  E    +   L+ +  R   + 
Sbjct: 73  GAIVAEIGPQQLIEMFEVMAELEAMCARLAARRMSPA--EHAILMATHLACKQARDDADS 130

Query: 139 DLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPALVHHAR 198
           D     N++ H   Y GS    L +    L  ++ P   L LR  +R  A   +   H  
Sbjct: 131 DAYFYKNEEFHQQIYIGSKNTFLEEQARALQRRLRPYRRLQLRVRNRVTA---SFDEHGA 187

Query: 199 LLEGLREG 206
           +++ + EG
Sbjct: 188 VVDAIIEG 195


>gi|152981662|ref|YP_001352127.1| GntR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 251

 Score = 64.3 bits (155), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 64/116 (55%)

Query: 14  KIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLSDALGTSPMPVREAVRQLAAEGALE 73
           +++   L + V + L  LI  G + PG KL  + + + LG S  P+REA++ LA+EG ++
Sbjct: 19  RMERQRLHDAVVEHLQRLIIEGVLTPGMKLNEREVCERLGISRTPLREAMKVLASEGLID 78

Query: 74  ILPNRAMRVPLMTKGKFRELLKIRLALEGLAAEHAARHIDAAALEEVARLHEDLSV 129
           I+PNR   V  M   +  E  ++   LE L+ E AA  I  A + ++  LH+ + V
Sbjct: 79  IVPNRGAFVSKMNDTEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHQAMLV 134


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 482,316
Number of extensions: 18455
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 4
Length of query: 234
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 154
Effective length of database: 925,261
Effective search space: 142490194
Effective search space used: 142490194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)