BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3391.p
         (213 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980755|ref|YP_001352153.1| membrane-associated protein ded...   176   1e-45
gi|152980844|ref|YP_001353992.1| dedA family protein [Janthinoba...    58   4e-10

>gi|152980755|ref|YP_001352153.1| membrane-associated protein dedA
           [Janthinobacterium sp. Marseille]
          Length = 214

 Score =  176 bits (446), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 135/200 (67%), Gaps = 2/200 (1%)

Query: 1   MDILLFLVDFIVHIDRHLAELAVSYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 60
           MD + F  D I+H+D++L      YG  ++++LF IIF ETGLVV P+LPGD+LLF+ GA
Sbjct: 1   MDFMQFF-DMILHVDKYLGTFIAQYGMLIYVVLFAIIFSETGLVVFPLLPGDTLLFIAGA 59

Query: 61  LAATGAYDIHLMVLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKQYLEKTHAFFE 120
             A+G+ ++ L++  L+ AAILG++ NY IG  +G KVF   + R   +  L KTH F+E
Sbjct: 60  FCASGSMNLWLLLGLLMAAAILGNTVNYWIGHAIGEKVFTH-DYRWLDRDALRKTHTFYE 118

Query: 121 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTYPRFFFYNVIGGIAWVASFSYAGYFFGNLP 180
           KHGGK +I+ARF PI RTFAPF+AGV  MT+ RF  +N IG + WV      GY FGN+P
Sbjct: 119 KHGGKTLILARFIPIARTFAPFIAGVSEMTFFRFQLFNCIGAVLWVGLLVVGGYLFGNIP 178

Query: 181 VVKQNLSLLIVAIVIVSILP 200
           +++ +L+ +++  V  + +P
Sbjct: 179 IIRDHLNTIVLIGVGAAAVP 198


>gi|152980844|ref|YP_001353992.1| dedA family protein
           [Janthinobacterium sp. Marseille]
          Length = 199

 Score = 58.2 bits (139), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 9/186 (4%)

Query: 30  FLILFLIIFCETGLVVTPILPGDSLLFVTGALAATGAYDIHLMVLTLIVAAILGDSTNYQ 89
           +L +FL++  E    V P +P + ++ + G +AA G  +I +++L     +++G    Y 
Sbjct: 14  YLGIFLLMLAEN---VFPPIPSELIMPLAGFVAARGELNIFVVILVGTAGSVVGALPWYY 70

Query: 90  IGKMLGIKVFDKPNSR-----IFKKQYLEKTHAFFEKHGGKAIIIARFAPIVRTFAPFVA 144
            G + G +   +  +R           ++K   +FE+H   A+   R  P +RT     A
Sbjct: 71  AGALFGKERLKRLAARHGRWLTVSPGDIDKASGWFERHDAAAVFFGRLIPAIRTLISVPA 130

Query: 145 GVGAMTYPRFFFYNVIGGIAWVASFSYAGYFF-GNLPVVKQNLSLLIVAIVIVSILPGII 203
           G   M    F  Y+ +G + W +  +  GY       VV+  +  +  A+V   I   I 
Sbjct: 131 GGVKMPMLPFLLYSTVGSLIWTSFLALTGYLLQSQYEVVQHYVDPVSKAVVYTVIAVYIY 190

Query: 204 EYIRHK 209
            +IR K
Sbjct: 191 RFIRFK 196


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.332    0.149    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 472,726
Number of extensions: 18658
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 134
Effective length of database: 928,958
Effective search space: 124480372
Effective search space used: 124480372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)