BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3389.p (616 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport sy... 907 0.0 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 314 1e-86 gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 304 8e-84 gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport sy... 302 4e-83 gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport sy... 274 1e-74 >gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 595 Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/588 (78%), Positives = 525/588 (89%) Query: 26 SSPTARKSALAALRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMIDLGFGAAG 85 +S +K ++A LR LL FL PYKKQF+LAG+ALIVAAAATLA+PYAF+QMIDLGFGA G Sbjct: 5 TSRELQKGSIATLRGLLKFLLPYKKQFVLAGIALIVAAAATLAIPYAFRQMIDLGFGANG 64 Query: 86 SKSASHINLYFLALFGVACVLGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFE 145 S IN YF+ALFGVACVL +ATA RFYMVSWLGERVTAD+R+AVY+HVVTQSP+FFE Sbjct: 65 MHDTSSINTYFIALFGVACVLAIATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFE 124 Query: 146 TTKTGEVLSRLTADTTLIQTLVGTSISMALRNALLFAGGMTMLFITSARLTSIIIVMLAA 205 TT++GEVLSR+T DTTLIQTL+GTSISMALRNALLFAGG+ MLF TS +L+SII+V LA Sbjct: 125 TTQSGEVLSRITTDTTLIQTLIGTSISMALRNALLFAGGLVMLFFTSIKLSSIILVTLAF 184 Query: 206 VVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEAHRFAQSVERA 265 VVLPIV++GRRVR LSR SQDRVADASA+AGEILNAMPTVQA+THE+IEA RF Q+VE A Sbjct: 185 VVLPIVWFGRRVRTLSRDSQDRVADASALAGEILNAMPTVQAYTHEKIEAKRFGQTVENA 244 Query: 266 FQTAMERIRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGS 325 F+TAM RIRARSLLT++AILLVFGAIVFVLWLGAHAV++GSMSGG+LGQFILY+++VAG+ Sbjct: 245 FKTAMRRIRARSLLTMIAILLVFGAIVFVLWLGAHAVIDGSMSGGQLGQFILYSAIVAGA 304 Query: 326 LGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPRTANGAALQIDALDFHYP 385 +GALSEV+GD QRAAGATERLL+LL+ QSP+ S P LPPR ANGAAL +D + FHYP Sbjct: 305 IGALSEVLGDAQRAAGATERLLELLSVQSPISSPATPRSLPPRRANGAALTLDLVTFHYP 364 Query: 386 SRPGSASLSGFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDIRYLT 445 SRP + +LS S+++Q GETVA+VGPSGAGKT+LFQLLLRFYDPQ+G I LDG+DIR L Sbjct: 365 SRPLTPALSNLSVSIQAGETVAIVGPSGAGKTSLFQLLLRFYDPQEGVIELDGIDIRELD 424 Query: 446 LQDLRAAIGIVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPNGYQC 505 L LR IGIVPQDTVIFSANAMENIR+GRP+A+D EVIAAA++AAAHEFIERLP GY Sbjct: 425 LHALRNTIGIVPQDTVIFSANAMENIRYGRPEATDEEVIAAARLAAAHEFIERLPEGYLS 484 Query: 506 FLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTT 565 FLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQ ALEAAMVGRTT Sbjct: 485 FLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTT 544 Query: 566 LVIAHRLATVQRADRIIVLEHGRIVETGTHAELVARNGLYAGLAALQF 613 LVIAHRLATVQRADRIIV+EHG+IVETGTHA LVA GLYA LAALQF Sbjct: 545 LVIAHRLATVQRADRIIVMEHGKIVETGTHASLVAAGGLYASLAALQF 592 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 314 bits (805), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 212/604 (35%), Positives = 328/604 (54%), Gaps = 32/604 (5%) Query: 21 NSPQSSSPTARKSALAALRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMID-- 78 N+ + P+ A+L +L F PY+ Q LL L + + AATL PY ++D Sbjct: 104 NAAEEQPPST-----ASLFRLWRFAKPYRGQLLLGFLLTLASTAATLVPPYMTMPLMDNV 158 Query: 79 -LGFGAAGSKSASHINLYFLALFGVACVLGVATALRFYMVSWLGERVTADLRSAVYAHVV 137 + + + LY LFG A R Y+++ + ER+ ADLR+ Y H++ Sbjct: 159 LIPYQNGVPIDKGLVALYLGGLFGSALFAWGLGWARTYILALVSERIGADLRTTTYEHLL 218 Query: 138 TQSPEFFETTKTGEVLSRLTADTTLIQTLVGTSISMALRNALLFAGGMTMLFITSARLTS 197 S E+F +TG++++R+ ++T I + + L F + M+ +T+A L S Sbjct: 219 RLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHL-------LDFFTDVLMIMMTAAILIS 271 Query: 198 IIIVMLAAVVLPIVFYGRRVR----KLSRASQ--DRV-ADASAMAGEILNAMPTVQAFTH 250 I + +LP+ F + KL + DR+ + + + + + + V+AF Sbjct: 272 INPWLALVTLLPLPFIAWMIHVVRDKLRNGFEKVDRIWSQVTNVLADTIPGIRVVKAFAQ 331 Query: 251 EEIEAHRFAQSVERAFQTAMERIRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGG 310 E+ EA RF ++ + SL + L ++ V LG V +G ++ G Sbjct: 332 EKREAARFREANNHNLVVNDRVNKVWSLFSPTVTFLTEIGLLVVWALGIWQVSQGMITVG 391 Query: 311 ELGQFILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPRTA 370 L F+ Y S L ++S ++ TQ+AA +R+ D+L S V PE P Sbjct: 392 VLTAFLAYISRFYTRLDSMSRIVSVTQKAATGAKRIFDILDHVSSV-----PEATNPVHL 446 Query: 371 NG--AALQIDALDFHYPSRPGSASLSGFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYD 428 + + I + F Y +R A + G L + PGE + +VG SG+GK+TL L+ RFYD Sbjct: 447 DKVQGKITIKDIGFRYGNR---AVIRGLDLTINPGEMIGLVGHSGSGKSTLVNLICRFYD 503 Query: 429 PQQGNIRLDGVDIRYLTLQDLRAAIGIVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQ 488 G I +DGVD+R + + + R IG+V Q+ +F +NI +G+PDAS ++IAAA+ Sbjct: 504 VSAGAIMVDGVDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREDIIAAAR 563 Query: 489 MAAAHEFIERLPNGYQCFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAES 548 A AHEFI RLP+GY +GERG LSGG+RQRI+IARALL +P +L+LDEATS++D + Sbjct: 564 AAHAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPHILILDEATSSVDTTT 623 Query: 549 ERLVQSALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVETGTHAELVARNGLYAGL 608 ER +Q AL+ + GRTT+ IAHRL+T++RADRI+V++ G+IVE G+H EL+ R G Y L Sbjct: 624 EREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLQREGAYYKL 683 Query: 609 AALQ 612 Q Sbjct: 684 YQAQ 687 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 304 bits (779), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 204/591 (34%), Positives = 318/591 (53%), Gaps = 14/591 (2%) Query: 28 PTARKSALAALRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMID-LGFGAAGS 86 P + +S + L+ L+P+L YK + LA LI A A + VP K++ID L + Sbjct: 13 PASNRSDWSTLKTLIPYLWTYKWRVGLALAFLIAAKMANVGVPLVLKRLIDSLTITPGST 72 Query: 87 KSASHINLYFLALFG-VACVLGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFE 145 ++ + L L +G + + T LR Y + + +R + V+ H+ + S F Sbjct: 73 QAMLVLPLGILIAYGALRLSTTLFTELREYTFAKVTQRAVRTIALKVFRHLHSLSLRFHL 132 Query: 146 TTKTGEVLSRLTADTTLIQTLVGT---SISMALRNALLFAGGMTMLF-ITSARLTSIIIV 201 +TG + + T I +L+ SI L +L G + + + I +T + +V Sbjct: 133 NRQTGGMTRDIERGTKGISSLISYTLFSILPTLIEIVLVLGYLVLHYDIWFTVITGVALV 192 Query: 202 MLAAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEAHRFAQS 261 A + + + R R D + A+ A + L TV+ F +E+ EA R+ + Sbjct: 193 SYIAFTVIVTEWRTHFR---RTMNDLDSKANTKAIDSLINYETVKYFGNEDYEARRYDEG 249 Query: 262 VERAFQTAMERIRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASL 321 ++R A++ + SLL ++ A+ +LW V+ G+M+ G+L + Sbjct: 250 LKRYETAAVKSQTSLSLLNTGQSSIIAIAVTLILWRATQGVISGTMTLGDLVLVNAFMIQ 309 Query: 322 VAGSLGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPRTANGAALQIDALD 381 + L L + + +++ ERL LL + + L +GA ++ +D Sbjct: 310 LYIPLNFLGVIYREIKQSLADMERLFSLLDQNREIADKPDTQAL---VTDGAEVRFSHVD 366 Query: 382 FHYPSRPGSASLSGFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDI 441 F Y + L + G T AVVG SG+GK+TL +LL RFYD QG I +DG D+ Sbjct: 367 FSYEA--NRQILFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNQGAILIDGQDV 424 Query: 442 RYLTLQDLRAAIGIVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPN 501 R +T LR AIGIVPQDTV+F+ NI +G+P AS A+++AAAQ A HEFIE LP+ Sbjct: 425 RDVTQTSLRQAIGIVPQDTVLFNDTIAYNIAYGKPGASHADIVAAAQSAYIHEFIESLPD 484 Query: 502 GYQCFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMV 561 GY +GERG++LSGG++QR+AIAR LLK+P +L+ DEATSALD++SE+ +Q+ L+ Sbjct: 485 GYNTMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKSEQAIQAQLKEIAQ 544 Query: 562 GRTTLVIAHRLATVQRADRIIVLEHGRIVETGTHAELVARNGLYAGLAALQ 612 RTTL+IAHRL+T+ A +I+VL+ GRI+E GTH +L+A G YA + Q Sbjct: 545 NRTTLIIAHRLSTIADAAQILVLDKGRIIERGTHMQLLASEGAYAQMWMRQ 595 >gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 578 Score = 302 bits (774), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 206/579 (35%), Positives = 314/579 (54%), Gaps = 15/579 (2%) Query: 38 LRKLLPFLSPYKKQFLLAGLALIVAAAATLAVPYAFKQMIDLGFGAAGSKSASHINLYFL 97 L++L L+PYKK+ +A L +I+ A P + ++D GFG S S + L + Sbjct: 7 LKRLFGMLAPYKKRLAVALLGMIMTALTEPMFPAVMRVLLDKGFGGKPSFS---LWLVPV 63 Query: 98 ALFGVACVLGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLT 157 A+ G+ + G++T YM++W+ R+ LR ++ ++ F+ T G V++ + Sbjct: 64 AIVGIFVLRGISTFTTTYMMTWVSSRLLTTLRKQMFERMLDVPLGFYATHSVGRVINSMM 123 Query: 158 ADTTLIQTLVGTSISMALRNALLFAGGMTMLFITSARLTSIIIVMLAAVVLPIVFYGRRV 217 + I ++ + +R++L ++ LF + RLT + +V+L + + + GRR+ Sbjct: 124 FEVQQIIEMITKVYTSIIRDSLTVIVLLSFLFWLNWRLTLVALVLLPLIAIVVRATGRRL 183 Query: 218 RKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEAHRFAQSVERAFQTAMERIRARS 277 R+L+R Q + + + E A ++ F E RF ++ M A + Sbjct: 184 RRLTREYQTVNGEMTQVIEETTRANQVIKIFGGHRYEEERFEVRADKLRGYTMRMATAMA 243 Query: 278 LLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQ 337 T V ++ A+ V+ + + + G FI ++ L ++EV G Q Sbjct: 244 ATTPVTQVMASTAVAIVIVIALIQSGQNQTTVGGFVSFITAMLMLLTPLKNIAEVNGPLQ 303 Query: 338 RAAGATERLLDLLAAQSPVQSVLLPEKLPPRT-ANGAALQID--ALDFHYPSRPGSASLS 394 R A E + L+ A+ PE+ + A AA ++D L F YP + + +L Sbjct: 304 RGLTAAEAVFKLIDAE--------PERTNGKDLAARAAGRLDFVRLGFTYPGQQ-TMALQ 354 Query: 395 GFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDIRYLTLQDLRAAIG 454 +L+VQPGET+A VG SG GK+TL L+ FY G I+LDGV I ++L LR I Sbjct: 355 DINLSVQPGETIAFVGMSGGGKSTLVNLVPGFYSATAGEIQLDGVSIEEISLSSLRKQIA 414 Query: 455 IVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPNGYQCFLGERGVRL 514 +V Q V+F NI +G + ++AAA A E I LP G + +G+ G RL Sbjct: 415 MVSQHVVLFDDTIAANIAYGDANPDRTRIMAAAHAAHLDEVIAGLPEGLETMIGDNGSRL 474 Query: 515 SGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLAT 574 SGGQRQR+AIARA+ K+ P+L+LDEATSALD+ESER VQ+AL+ M GRTTLVIAHRL+T Sbjct: 475 SGGQRQRLAIARAIYKDAPILILDEATSALDSESERAVQAALDELMKGRTTLVIAHRLST 534 Query: 575 VQRADRIIVLEHGRIVETGTHAELVARNGLYAGLAALQF 613 ++RADRI VL G IVE G+H EL+ARNG+YA L LQF Sbjct: 535 IERADRIAVLAEGHIVELGSHQELLARNGVYANLYHLQF 573 >gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 658 Score = 274 bits (700), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 172/519 (33%), Positives = 284/519 (54%), Gaps = 18/519 (3%) Query: 102 VACVLGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLTADTT 161 V V G+ T L+ Y+ L ++V DLR A Y + S + + TG++++R D Sbjct: 122 VCAVRGILTGLQGYLGETLAQKVGYDLRMAFYEKLQRLSFSYHDKIHTGDLIARGMLDLE 181 Query: 162 LIQTLVGTSISMALRNALLFAGGMTMLFITSARLTSIIIVM--LAAVVLPIVFY-----G 214 ++ + + + LL G S RL SI + + LA +P V + G Sbjct: 182 GVRAFLEFGVLRIITLTLLLGVG-------SWRLLSIDVTLGLLALSFVPFVAWNAARTG 234 Query: 215 RRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEAHRFAQSVERAFQTAMERIR 274 R+R + Q +++ + E L + V+AFT E +F + + A + + +RI Sbjct: 235 LRLRVSWQRLQKMMSEMTLNMEENLQGVRVVRAFTSRLHEMSKFDKISDVALRLSNQRIT 294 Query: 275 ARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMG 334 R +L + ++ VLW+G V G+++ G L +F+ + +++ L + ++ Sbjct: 295 ERMGNMSAMVLAYYTSMALVLWVGGQRVASGALTVGSLTEFLTFITILQQPLRQIGMIVN 354 Query: 335 DTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPRTANGAALQIDALDFHYPSRPGSAS-L 393 + RA G+ RL ++L ++ E + L+ +++ F Y P + L Sbjct: 355 ASARATGSGARLFEVLDTDPEIKDA---ENAHDLKIDKGLLRFESVSFAYGHGPNDRTVL 411 Query: 394 SGFSLAVQPGETVAVVGPSGAGKTTLFQLLLRFYDPQQGNIRLDGVDIRYLTLQDLRAAI 453 S V+ GE + +VG G+GK+TL L+ RFY+ G I +DG D+R L+L LR+A+ Sbjct: 412 KDISFEVRKGEVLGIVGAPGSGKSTLAHLIPRFYEVSGGRITIDGQDLRALSLSSLRSAV 471 Query: 454 GIVPQDTVIFSANAMENIRFGRPDASDAEVIAAAQMAAAHEFIERLPNGYQCFLGERGVR 513 +V Q+ +F + N+ + P A + VI AA +A HE +E+LP GY +GERGV Sbjct: 472 SLVQQENFLFDTSVHNNVAYPEPQAGEERVIEAASVAQIHEHVEQLPKGYTTRVGERGVA 531 Query: 514 LSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLA 573 LSGGQRQR+ IAR LL P +L+LD++T+A+D +E+ V++AL++++ T++IAHRL+ Sbjct: 532 LSGGQRQRMTIARGLLDQPSILVLDDSTAAIDPATEQRVRAALQSSLKDTATIIIAHRLS 591 Query: 574 TVQRADRIIVLEHGRIVETGTHAELVARNGLYAGLAALQ 612 +++ AD+IIVL+ GRIVE GTHAEL+A G YA L +LQ Sbjct: 592 SLKHADQIIVLDEGRIVERGTHAELIAAGGRYAELWSLQ 630 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,173,359 Number of extensions: 44032 Number of successful extensions: 419 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 346 Number of HSP's successfully gapped: 61 Length of query: 616 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 527 Effective length of database: 891,988 Effective search space: 470077676 Effective search space used: 470077676 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)