BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3386.p (586 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 469 e-133 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 464 e-132 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 435 e-123 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 431 e-122 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 430 e-121 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust. Identities = 288/584 (49%), Positives = 387/584 (66%), Gaps = 18/584 (3%) Query: 3 FNNFSISTRLALAFSILILVIAAIVTLGLARLSDINQSLDLVVNDRYKKIAIINTISGKV 62 N I RLAL+F ++ V+ + + RL ++ ++ +V NDRY K + I + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 63 DDVAISLRNELLMTNPEQIANEQKIIEALSAENTKLYDELTRLIADPEAKAKLTQVTETR 122 ++ A ++RN LLMT+ QI E IE S + D+L R I + + + +T+ R Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 123 KKYAAMRKEIDRLFTSGEKDAAIKLMLSQMVPLQKIYFGQLDELANMQQKLMDKSVEEAE 182 ++ ++ + L G + A L+ +++ P Q Y LD L Q LM K+ E+A Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 183 ATYLATRNIMLASGVLAALFAGFVAWTISRSITRPLSRAVEVAETVAAGDLTAVITAHST 242 + ++ V+A + + F+ + +RSITRPLS+AV +A VA GDLT I S Sbjct: 181 EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSK 240 Query: 243 DETGRLLQALAAMNQKLKAIVLEVRHSTDSMVTASTQIATGNLDLSSRTEEQASALEETA 302 DETG+LLQAL MN L IV +VR TD++ TAS+QIATGNLDLSSRTEEQAS+LEETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 303 SSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVDIIS 362 SS+E+LTS+VKQNAD+ R+S++LA TA+ VA +GG V QVV+TMG+INDS+ KIVDII Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELINDSVN 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LI+DSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVE 420 Query: 423 QVSSGTELVAQAGNTMDQVVNSIEQVGHIVGEISAATREQSDGIEQVNQAIMQMDNTTQQ 482 +V++G+ LV AG TM +VV S+ +V I+GEI+AA++EQ+DGIEQ+NQA+MQMD TQQ Sbjct: 421 KVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 483 NAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAPQAAALKSSAVTSKAL 542 NAALVEEAAAAA++LQDQA L ++VSVF+LD A AL++++ + A Sbjct: 481 NAALVEEAAAAAESLQDQANNLSQVVSVFKLD------------ANAVALQATSRVA-AP 527 Query: 543 PSKPQTQPQPQAQSARPAAIGANQAPRALPNSIKEDKKEEWESF 586 S+P ++P Q +SA Q R ++ D +EWE F Sbjct: 528 ASRPVSKPAQQIRSANV----DKQIVRQRASATAGD-GDEWEQF 566 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 464 bits (1195), Expect = e-132, Method: Compositional matrix adjust. Identities = 283/585 (48%), Positives = 384/585 (65%), Gaps = 15/585 (2%) Query: 3 FNNFSISTRLALAFSILILVIAAIVTLGLARLSDINQSLDLVVNDRYKKIAIINTISGKV 62 N I RL+L+F +++++ + TL R+ +N ++ V DRY K + N + + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 63 DDVAISLRNELLMTNPEQIANE-QKIIEALSAENTKLYDELTRLIADPEAKAKLTQVTET 121 + +A ++RN LLMT I E +I +A + N L EL + + + + + Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALV-ELEKTVRSERGRQTIAGLQAD 119 Query: 122 RKKYAAMRKEIDRLFTSGEKDAAIKLMLSQMVPLQKIYFGQLDELANMQQKLMDKSVEEA 181 R K+ ++ + +L ++G KD A+ L+ +++ P Q Y +D+L + Q +LM KS EA Sbjct: 120 RSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEA 179 Query: 182 EATYLATRNIMLASGVLAALFAGFVAWTISRSITRPLSRAVEVAETVAAGDLTAVITAHS 241 A T+ ++ ++A L A A +RSITRPLS+AV +A VA GDLT I S Sbjct: 180 NAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVES 239 Query: 242 TDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVTASTQIATGNLDLSSRTEEQASALEET 301 DETG+LLQAL MN+ L IV +VR TD++ +AS QIATGNLDLSSRTE+QAS+LEET Sbjct: 240 KDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEET 299 Query: 302 ASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVDII 361 ASS+E+LTS+VKQNA++ R+S++LA +A+ VA +GG V +VV TMG INDS++KIVDII Sbjct: 300 ASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDII 359 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELINDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIKELI DSV Sbjct: 360 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSV 419 Query: 422 NQVSSGTELVAQAGNTMDQVVNSIEQVGHIVGEISAATREQSDGIEQVNQAIMQMDNTTQ 481 ++VS G+ LV AG TM +VV S+++V I+ EI+AA++EQ+DGIEQ+NQA+MQMD TQ Sbjct: 420 DKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQ 479 Query: 482 QNAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAPQAAALKSSAVTSKA 541 QNAALVEEAAAAA++LQ QA L ++V VF+LD G + + P A + V KA Sbjct: 480 QNAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNAV--PTYTAPEQPKVAGKA 537 Query: 542 LPSKPQTQPQPQAQSARPAAIGANQAPRALPNSIKEDKKEEWESF 586 K +T Q + + A + N P +EWE F Sbjct: 538 ALHKVKT-TQQKIEDKEFARVPRNVVPAG----------DEWEQF 571 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 435 bits (1119), Expect = e-123, Method: Compositional matrix adjust. Identities = 267/519 (51%), Positives = 362/519 (69%), Gaps = 8/519 (1%) Query: 1 MRFNNFSISTRLALAFSILILVIAAIVTLGLARLSDINQSLDLVVNDRYKKIAIINTISG 60 M+ +N I RL LAF++++L++A+++ +G+ RL D+ Q+ + +K+ T Sbjct: 1 MKISNLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHKERL---THEW 57 Query: 61 KVDDVAISLRNEL-LMTNPEQIANE-QKIIEALSAENTKLYDELTRLIADPEAKAKLTQV 118 + +VA ++R + +N +I + QK +E S E +KL +E+ LI E K ++ V Sbjct: 58 YLGNVANAIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGKKLMSVV 117 Query: 119 TETRKKYAAMRKEIDRL---FTSGEKDAAIKLMLSQMVPLQKIYFGQLDELANMQQKLMD 175 E R Y +RK++ +L + AA KL+ ++M P Y + + + QQ + Sbjct: 118 GEKRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSFQQVIFQ 177 Query: 176 KSVEEAEATYLATRNIMLASGVLAALFAGFVAWTISRSITRPLSRAVEVAETVAAGDLTA 235 ++ + +A Y + R I++ G +A + + F+AW +SRSITRPL AV VA TVA+GDL Sbjct: 178 RAKADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRN 237 Query: 236 VITAHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVTASTQIATGNLDLSSRTEEQA 295 I + S DETG+LL+AL MN L V +VR +++ TAS QIA GNLDLSSRTEEQA Sbjct: 238 KIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQA 297 Query: 296 SALEETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSR 355 S+LEETASS+E+LTS+VKQNAD+ R++++LA +A+ VA +GGE V +VV TM IN S++ Sbjct: 298 SSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAK 357 Query: 356 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKE 415 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK Sbjct: 358 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKT 417 Query: 416 LINDSVNQVSSGTELVAQAGNTMDQVVNSIEQVGHIVGEISAATREQSDGIEQVNQAIMQ 475 LI DSV++V G++LV +AG TMD+VV S++ V I+ EI AA++EQS GIEQVNQAI Q Sbjct: 418 LIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQ 477 Query: 476 MDNTTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLD 514 MD TQQNAALVEEAAAAA++L +QA +L E VSVF+LD Sbjct: 478 MDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLD 516 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 431 bits (1107), Expect = e-122, Method: Compositional matrix adjust. Identities = 273/588 (46%), Positives = 376/588 (63%), Gaps = 22/588 (3%) Query: 1 MRFNNFSISTRLALAFSILILVIAAIVTLGLARLSDINQSLDLVVNDRYKKIAIINTISG 60 M+ N ISTRL+ F++L+ ++ + +G+ RL ++ S D++ K + Sbjct: 1 MKITNLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLS 60 Query: 61 KVDDVAISLRNELLMTNPEQIANEQKIIEALSAENTKLYDELTRLIADPEAKAKLTQVTE 120 VD T+ E A QK ++ S +L E+ +I PE K ++ Sbjct: 61 AVDVNGARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVV 120 Query: 121 TRKKYAAMRKEIDRLFTSGEKDAAIKLMLSQMVPLQKIYFGQLDELANMQQKLMDKSVEE 180 R Y +R+ + +L G+ A L+ +M+P Y +D + ++KL+D++ Sbjct: 121 ARNAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTS 180 Query: 181 AEATYLATRNIMLASGVLAALFA--GFVAWTISRSITRPLSRAVEVAETVAAGDLTAVIT 238 ++ +L+ R++++ G+LAA A F AW ++ SITRPL+RAV VA TVA+GDL+A I Sbjct: 181 IQSAFLSGRSLLI--GLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDLSAKIE 238 Query: 239 AHSTDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVTASTQIATGNLDLSSRTEEQASAL 298 S DETG+L+QAL M Q L V EVR T+++ TAS QIA+GNLDLSSRTEEQAS+L Sbjct: 239 VSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSL 298 Query: 299 EETASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIV 358 ETA+S+ QLTS+V+QNAD+ R+++ LA +A+ VA +GG V +VV TM +IN+S+RKIV Sbjct: 299 GETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIV 358 Query: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELIN 418 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LI Sbjct: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIG 418 Query: 419 DSVNQVSSGTELVAQAGNTMDQVVNSIEQVGHIVGEISAATREQSDGIEQVNQAIMQMDN 478 DSV +V +G++LV +AG+TM+++V+S+++V I+ EI AA++EQS GI+QVNQAI QMD Sbjct: 419 DSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQ 478 Query: 479 TTQQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAPQAAALKSSAVT 538 TQQNAALVEEAAAAA++LQDQA L +VS F+LD Q A + S Sbjct: 479 VTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLD-----------GNQPAFVSS---- 523 Query: 539 SKALPSKPQTQPQPQAQSARPAAIGANQAPRALPNSIKEDKKEEWESF 586 +P T P + Q+A+P AP+ + D +WE F Sbjct: 524 LDDIPVVRNTTPAIRTQAAKPLLSNPVHAPKREKATAGAD---DWEEF 568 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust. Identities = 253/544 (46%), Positives = 362/544 (66%), Gaps = 11/544 (2%) Query: 5 NFSISTRLALAFSILILVIAAIVTLGLARLSDINQSLDLVVNDRYKKIAIINTISGKVDD 64 N I +L L+F ++ ++ I L +L +N S+ L+ DRY K + N++ +V+ Sbjct: 6 NMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEVNK 65 Query: 65 VAISLRNELLMTNPEQIANEQKIIEALSAENTKLYDELTRLIA---DPEAKAKLTQVTET 121 +A++LR+ +L ++P +I ++++ A + K+ + L +L A E ++ Sbjct: 66 IALNLRDIMLSSDPAKI---KQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAIVA 122 Query: 122 RKKYAAMRKEIDRLFTSGEKDAAIKLMLSQM-VPLQKIYFGQLDELANMQQKLMDKSVEE 180 R +Y R + +L G K A K L Q+ +P+Q YF LD + + Q LM+ + + Sbjct: 123 RDQYVPARDTLLQLAQDG-KTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAGDA 181 Query: 181 AEATYLATRNIMLASGVLAALFAGFVAWTISRSITRPLSRAVEVAETVAAGDLTAVITAH 240 A AT + R I+ ++ L + V W ++RSITRPL+ AV VA VA GDL+ + Sbjct: 182 ASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPVFVK 241 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRHSTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 +T+E G+L+ AL MN L IV +VR+ T ++ AS +IA GN+DLSSRTE+QAS+LEE Sbjct: 242 TTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEE 301 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGTATAVANQGGEAVKQVVQTMGAINDSSRKIVDI 360 TAS++E+LTS+V++NAD+ +++++LA +AT VA QGG V +V+ TM AIN SS+KI DI Sbjct: 302 TASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAKEIKELINDS 420 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSATAA EIK LI+DS Sbjct: 362 TGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALIDDS 421 Query: 421 VNQVSSGTELVAQAGNTMDQVVNSIEQVGHIVGEISAATREQSDGIEQVNQAIMQMDNTT 480 V +V +G++LV QAG T+D+VV S+ + IV IS A++EQS GIEQV QAI+Q+D T Sbjct: 422 VAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDEGT 481 Query: 481 QQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAPQAAALKSSAVTSK 540 QQNAALVE++AAAAQ+L++QA +L++LVS+F+LD + T AP A L ++ Sbjct: 482 QQNAALVEQSAAAAQSLREQADQLMQLVSIFKLDR---QSVATSAAPAAGKLHLVTTSTA 538 Query: 541 ALPS 544 LP+ Sbjct: 539 LLPA 542 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.311 0.124 0.316 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 921,192 Number of extensions: 28553 Number of successful extensions: 281 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 21 Length of query: 586 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 498 Effective length of database: 895,685 Effective search space: 446051130 Effective search space used: 446051130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)