BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3383.p (213 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979953|ref|YP_001352742.1| hypothetical protein mma_1052 [... 222 2e-59 gi|152980265|ref|YP_001352743.1| paraquat-inducible protein A [J... 88 4e-19 >gi|152979953|ref|YP_001352742.1| hypothetical protein mma_1052 [Janthinobacterium sp. Marseille] Length = 212 Score = 222 bits (565), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 130/205 (63%), Positives = 162/205 (79%) Query: 1 MRKRTDLIVCEECDAVYQRPQLGQREIARCLRCGAELERDTGRRLQHLLPLTIGALILFV 60 M++ D+IVCE CDAVY R L RE+ARC CG ELERDTG + Q +LPLT+ +LI+F+ Sbjct: 1 MKEVHDVIVCEGCDAVYARVPLRAREVARCPCCGTELERDTGGQQQRILPLTVASLIMFL 60 Query: 61 IANIFPIVTIELQGLSADTTLIGAVMALTRDGMSEVALLVLATTLLFPLIQLGVLLYLLL 120 IAN+FPIV IEL+GL + TTL GAVMAL +GMS VA+LVLATTLLFPL+QL +LL+LLL Sbjct: 61 IANLFPIVEIELRGLRSQTTLTGAVMALAGEGMSLVAMLVLATTLLFPLLQLLILLWLLL 120 Query: 121 PGARATRPPGFVLLLRLMQAARPWGMIEVFMLGILVALIKLSNMAEVIPGAALWSFGCLT 180 P + R GF L+R+MQ+ RPWGMIEVF+LG+LVA+IKLS+MA V+PG ALW+F LT Sbjct: 121 PLQQQHRATGFAWLVRIMQSLRPWGMIEVFLLGVLVAIIKLSSMATVLPGPALWAFMALT 180 Query: 181 VLLTVVVSFNPRYLWHMWEQQQAEQ 205 VLLTVVVSF+PR W M E + ++ Sbjct: 181 VLLTVVVSFDPRGFWDMVEGIEEDK 205 >gi|152980265|ref|YP_001352743.1| paraquat-inducible protein A [Janthinobacterium sp. Marseille] Length = 244 Score = 88.2 bits (217), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 103/209 (49%), Gaps = 10/209 (4%) Query: 7 LIVCEECDAVYQRPQLGQREIARCLRCGAELERDTGRRLQHLLPLTIGALILFVIANIFP 66 LI C CD V++ + G A C RCGA+L L L I A ++++ AN+ P Sbjct: 33 LIACHHCDTVWEEAEEG----AACGRCGAKLRTRKADSLNRTWALLIAACMMYLPANLLP 88 Query: 67 I-VTIELQGLSADTTLIGAVMALTRDGMSEVALLVLATTLLFPLIQLGVLLYLLLPGARA 125 + +T L G DT L G V+ G +A ++ + L PL +L L L++ R Sbjct: 89 VMITKTLFGSQNDTILSG-VIYFWVSGAYGLAAIIFVASFLVPLFKLAALFILVVMAQRR 147 Query: 126 T--RPPGFVLLLRLMQAARPWGMIEVFMLGILVALIKLSNMAEVIPGAALWSFGCLTVL- 182 + R L +++ W M++VF++ +L L+++ AE+ G + +FG + VL Sbjct: 148 SNWRRGERAKLYHVIELIGRWSMLDVFVVALLAGLVRIQGFAEITAGLGIAAFGSVVVLT 207 Query: 183 LTVVVSFNPRYLWHMWEQQQAEQYGDKGA 211 + +SF+P+ W ++ Q E + G+ Sbjct: 208 MLASLSFDPKLTWDGDDETQ-EHLNEAGS 235 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.143 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 427,393 Number of extensions: 14746 Number of successful extensions: 62 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 60 Number of HSP's successfully gapped: 2 Length of query: 213 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 134 Effective length of database: 928,958 Effective search space: 124480372 Effective search space used: 124480372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 127 (53.5 bits)