BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3382.p
         (234 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980265|ref|YP_001352743.1| paraquat-inducible protein A [J...   293   8e-81
gi|152979953|ref|YP_001352742.1| hypothetical protein mma_1052 [...    58   5e-10

>gi|152980265|ref|YP_001352743.1| paraquat-inducible protein A
           [Janthinobacterium sp. Marseille]
          Length = 244

 Score =  293 bits (749), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 137/200 (68%), Positives = 163/200 (81%)

Query: 17  AASLGVIGCHHCGTVWEAAHQHEPCGVCHAPLHVRKIDSLNRTWALLIAACIMYIPANLM 76
           A ++G+I CHHC TVWE A +   CG C A L  RK DSLNRTWALLIAAC+MY+PANL+
Sbjct: 28  AINMGLIACHHCDTVWEEAEEGAACGRCGAKLRTRKADSLNRTWALLIAACMMYLPANLL 87

Query: 77  PVMVTSTLFDEQRDTILSGVIYFWTSGEWGLAMVVFIASFLVPLFKLVALGILVFSARRR 136
           PVM+T TLF  Q DTILSGVIYFW SG +GLA ++F+ASFLVPLFKL AL ILV  A+RR
Sbjct: 88  PVMITKTLFGSQNDTILSGVIYFWVSGAYGLAAIIFVASFLVPLFKLAALFILVVMAQRR 147

Query: 137 SRWQRLQRAKLYRVVEAIGRWSMLDVFVVSVLTGLVKIHGFANVHAGIGIAAFGAVVVLT 196
           S W+R +RAKLY V+E IGRWSMLDVFVV++L GLV+I GFA + AG+GIAAFG+VVVLT
Sbjct: 148 SNWRRGERAKLYHVIELIGRWSMLDVFVVALLAGLVRIQGFAEITAGLGIAAFGSVVVLT 207

Query: 197 MLASLAFDPRLIWDETDRSE 216
           MLASL+FDP+L WD  D ++
Sbjct: 208 MLASLSFDPKLTWDGDDETQ 227


>gi|152979953|ref|YP_001352742.1| hypothetical protein mma_1052
           [Janthinobacterium sp. Marseille]
          Length = 212

 Score = 58.2 bits (139), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 7/199 (3%)

Query: 22  VIGCHHCGTVWEA----AHQHEPCGVCHAPLHVRKIDSLNRTWALLIAACIMYIPANLMP 77
           VI C  C  V+      A +   C  C   L         R   L +A+ IM++ ANL P
Sbjct: 7   VIVCEGCDAVYARVPLRAREVARCPCCGTELERDTGGQQQRILPLTVASLIMFLIANLFP 66

Query: 78  VMVTSTLFDEQRDTILSGVIYFWTSGEWGLAMVVFIASFLVPLFKLVALGILVFSARRRS 137
           ++         + T+   V+     G   +AM+V   + L PL +L+ L  L+   +++ 
Sbjct: 67  IVEIELRGLRSQTTLTGAVMALAGEGMSLVAMLVLATTLLFPLLQLLILLWLLLPLQQQH 126

Query: 138 RWQRLQRAKLYRVVEAIGRWSMLDVFVVSVLTGLVKIHGFANVHAGIGIAAFGAVVVLTM 197
           R      A L R+++++  W M++VF++ VL  ++K+   A V  G  + AF A+ VL +
Sbjct: 127 RATGF--AWLVRIMQSLRPWGMIEVFLLGVLVAIIKLSSMATVLPGPALWAFMALTVL-L 183

Query: 198 LASLAFDPRLIWDETDRSE 216
              ++FDPR  WD  +  E
Sbjct: 184 TVVVSFDPRGFWDMVEGIE 202


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 475,801
Number of extensions: 15992
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 154
Effective length of database: 925,261
Effective search space: 142490194
Effective search space used: 142490194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)