BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3381.p
         (542 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980478|ref|YP_001352744.1| paraquat-inducible protein B [J...   726   0.0  

>gi|152980478|ref|YP_001352744.1| paraquat-inducible protein B
           [Janthinobacterium sp. Marseille]
          Length = 543

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/536 (64%), Positives = 435/536 (81%), Gaps = 2/536 (0%)

Query: 8   EDKPALLQPRRVRQRNWLPSLVWLIPIIAAIVGLTLVAKILVDRGPMVTVSFRSAEGLEA 67
           E++  L  PR  R+R+W+PSLVW IPIIAA+VG+TLVA IL+ RGP + ++F++AEGLEA
Sbjct: 5   EERTPLPSPRVARRRDWMPSLVWFIPIIAALVGITLVAHILMQRGPEIVLTFKTAEGLEA 64

Query: 68  GKTKVKYKDVEIGQVQTLKLASDRSHVLVGIQLNQEASGFNAEDTRFWVVRPRIAASGIS 127
           GKT VKYKDV+IG V+ L+L+ DRSHV V +QLN++A  F A+DTR+WVVRPR+  SGIS
Sbjct: 65  GKTAVKYKDVQIGIVEGLRLSRDRSHVRVSVQLNKDAEAFTAKDTRYWVVRPRLDTSGIS 124

Query: 128 GLGTLLSGAYIGADAGASEETKKNFVGLEQPPIVTRDVSGRQFVLHTDDLGSLDIGSPIF 187
           GLGTLLSGAYIG DAG SEET + F GLE PPIVTRD SGRQF+L  +D+GSLD+GSP++
Sbjct: 125 GLGTLLSGAYIGVDAGTSEETVEEFAGLEVPPIVTRDASGRQFLLRANDIGSLDVGSPVY 184

Query: 188 YRRIKVGQVVAYDLDSDGRGVTLRIFVNAPYDKFVTQGSRFWHASGFDMELNASGFKLHT 247
           +RR+KVGQV AY+LD DG+GVTLR+FVNAPY+KFV   +RFWHASG DM++NASG  L T
Sbjct: 185 FRRVKVGQVAAYELDGDGKGVTLRVFVNAPYEKFVEANTRFWHASGLDMQVNASGLTLRT 244

Query: 248 QALSTVVLGGIAFRDRDEYQTSAP--AKEGTEYQLVEDESAAMKEPDGVPQTAVLYFDQS 305
           Q+L+T++LGGIAF   D    SA   A E T + L EDE+AAMK+ DG  +T +L+F+QS
Sbjct: 245 QSLATILLGGIAFGTPDLGTPSASPAALENTAFALAEDEAAAMKQKDGSSETILLFFNQS 304

Query: 306 LRGLQPGATVDFRGVVLGEVKSIGVEYDKQRGEFRMPVMVQIYPDRLGRRFQEETDGQRR 365
           LRGL PGA VDFRGVV+GEVKSIGVE+D+   EFRMPV+VQIYPDRL R+  +E+   R 
Sbjct: 305 LRGLSPGAPVDFRGVVIGEVKSIGVEFDRDEREFRMPVLVQIYPDRLRRQSTDESKESRY 364

Query: 366 SNAHLLRTLVKRGLRAQLRNGNLLTGQLYVAIDFFPKAKPAQIDPDKTPLELPTIPGSLD 425
           +    L+ L+ +GLRAQLR GNLLTGQ+YVA+DFFPK  P ++D +K P ELPT+P SLD
Sbjct: 365 TQKQRLQFLINKGLRAQLRPGNLLTGQVYVALDFFPKLPPLKVDLNKQPFELPTVPNSLD 424

Query: 426 ELQQQLSDIAGKLSKVPFDEIGHDLQTTLKTLNKTLSTAEQTAAHINNDIAPEMQAAMKD 485
           ELQ Q+ DIA KL+KVPFDEIG DL+T L TLNKTL +AE+    +NND++PE+ AAMKD
Sbjct: 425 ELQAQIKDIATKLNKVPFDEIGKDLRTALATLNKTLISAEELTRTLNNDVSPEITAAMKD 484

Query: 486 ARKTLNAAERTLSDDAPLQQDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQE 541
           ARKT+N+AE+TLS D+PLQQD+R+ M+E+++AA S+R+LTDYL++HPESL+RGK E
Sbjct: 485 ARKTINSAEQTLSQDSPLQQDMREAMREITRAAGSVRVLTDYLERHPESLLRGKPE 540


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,209,039
Number of extensions: 49711
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 454
Effective length of database: 895,685
Effective search space: 406640990
Effective search space used: 406640990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)