BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3380.p
         (210 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980001|ref|YP_001352745.1| hypothetical protein mma_1055 [...   141   3e-35

>gi|152980001|ref|YP_001352745.1| hypothetical protein mma_1055
           [Janthinobacterium sp. Marseille]
          Length = 220

 Score =  141 bits (355), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 111/183 (60%), Gaps = 6/183 (3%)

Query: 22  LAACGSSPPTQFYTLTSPADGGASTRTAGQGPQSFIEVMPVAVPERLARPQLVVRSDA-- 79
           LAAC ++   ++YTLT P    A T  A   P  FIE+ PVAVPERLARPQ+V+   A  
Sbjct: 31  LAACANTSNARYYTLTGPT-ASALTPPASATPL-FIELAPVAVPERLARPQMVLSKPAGQ 88

Query: 80  -TRVEVLEQDRWASPFNNELRDALAAGVASRLGAIDVSRSGRPADQVSYRINVELRDFEA 138
              +E+LEQ RW S F NE+RDAL+AG+ +RLGA+DVS+SGR   Q  +RI V+LR F+A
Sbjct: 89  SAELELLEQYRWTSSFENEMRDALSAGITNRLGAVDVSKSGRSQGQAVWRIAVQLRQFDA 148

Query: 139 TRNGQVQAVFGWTITRSGDRRSLACRLTAVEPVSGASNAEVVAATQKVVAQAVQEIAGNV 198
             N +V A F WT  RS    +  C+    E V    +A +    Q++  +A Q IA ++
Sbjct: 149 IENTRVDAAFSWTARRSDTGSNAVCQWAGSEAVGSGMDA-LAQGAQRITDRAAQMIAQHL 207

Query: 199 RSL 201
            +L
Sbjct: 208 ATL 210


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 399,513
Number of extensions: 15048
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 131
Effective length of database: 928,958
Effective search space: 121693498
Effective search space used: 121693498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)