BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3377.p (500 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Jan... 727 0.0 gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Jan... 365 e-102 gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Jan... 300 9e-83 gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Jan... 300 2e-82 gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA... 221 5e-59 >gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 466 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/427 (81%), Positives = 391/427 (91%), Gaps = 1/427 (0%) Query: 1 MTFEALGLNPSIIKALTEAGYTAPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 MTFE+LGL+ SIIKALTE+GYTAPT VQ +AIPAAI G+D++VSSQTGSGKTAAFMLP+L Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60 Query: 61 HQLADLPQAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 H+ A PQ +TPNQE Q++R+RG+RPR++PAQPKMLVLTPTRELALQVTT+TDKYG Sbjct: 61 HKFASEGDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKYG 120 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 A+M+RV+ VSILGGMPYPKQMQLL++NPEILVATPGRLIDHMESGKIDFSQLQILVLDEA Sbjct: 121 AFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGFIDDIEKIVAATP RQTMLFSATLDG+VGNMAKRIT + L IQIA S+T+HE Sbjct: 181 DRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHE 240 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 NI Q VHFVDDLSHKNR+LDHLLRD ++DQAV+FTATKRDADTIADRLNIAGFAAAALHG Sbjct: 241 NIKQCVHFVDDLSHKNRMLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHG 300 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 DMHQGARNRTL+ LRRGQ+R+LVATDVAARGIDVPGITHV NYDLPKF EDYVHRIGRTG Sbjct: 301 DMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRTG 360 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKTA-APRSPRKPGGWRPG 419 RAGRNG+A+SLVNHAE M VKRIERF KQ IPV+V+EGFEPK++A APRS KPGGW+PG Sbjct: 361 RAGRNGIAVSLVNHAESMNVKRIERFIKQLIPVEVIEGFEPKRSASAPRSNHKPGGWKPG 420 Query: 420 DGRSNSG 426 D R N+ Sbjct: 421 DNRGNTA 427 >gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 448 Score = 365 bits (937), Expect = e-102, Method: Compositional matrix adjust. Identities = 211/482 (43%), Positives = 287/482 (59%), Gaps = 40/482 (8%) Query: 1 MTFEALGLNPSIIKALTEAGYTAPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 M+F LGL I++A+TE+GYT PTP+Q +AIPA ++G DLL +QTG+GKTA F LP L Sbjct: 1 MSFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 HQLADLPQAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 H+LA + TP+ + A +RP + LVLTPTRELA QV + YG Sbjct: 61 HRLA-------TSGTPH-----ASASAQRP------IRALVLTPTRELAAQVEESVRTYG 102 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Y+ V I GG+ Q+++L +ILVATPGRL+DHM+ G ++ + +QILVLDEA Sbjct: 103 KYLNLNSAV-IFGGVGINPQIKMLKHGVDILVATPGRLLDHMQQGTVNLNHIQILVLDEA 161 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGFI DI +++AA P RQ +LFSAT + +A + N+P TI++A ++ E Sbjct: 162 DRMLDMGFIKDIRRVLAALPKNRQNLLFSATFSNEIKALADGLLNSPATIEVARRNSTVE 221 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 I Q++H VD K+ +L HL++ + Q ++FT TK A+ + ++L G + A+HG Sbjct: 222 IIEQKIHPVDR-DKKHPMLAHLIKSNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHG 280 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 + Q AR R L+ + G +++LVATD+AARGID+ + HV NYDLP EDYVHRIGRTG Sbjct: 281 NKSQSARTRALSEFKDGSLQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTG 340 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKTAAP-----RSPRKPGG 415 RAG G A+SLV E +K IE+ K+ +P +V+ GFEP A P RS PG Sbjct: 341 RAGATGEAVSLVCVDELEMLKDIEKLIKRKLPSEVIPGFEPDLNAKPQPIQRRSNDAPGR 400 Query: 416 WRPGDGRSNSGPRFGAGNREGGGHREGGFGGNREGGFGGNREGRSFGGAKPGNGPRREGG 475 G GR+ A + G GGFGGN A+P P R GG Sbjct: 401 RPQGQGRNAPAKSAKAPAPKPNGSSRGGFGGN--------------SNARPA-APHRSGG 445 Query: 476 AG 477 G Sbjct: 446 RG 447 >gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 513 Score = 300 bits (769), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 178/444 (40%), Positives = 252/444 (56%), Gaps = 31/444 (6%) Query: 3 FEALGLNPSIIKALTEAGYTAPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSLHQ 62 FE GL P I++AL++ GY PTP+Q +AIP + G D++ ++QTG+GKTA F LP + Sbjct: 38 FEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQL 97 Query: 63 LADLPQAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYGAY 122 L A + + R RA L+LTPTRELA QV D AY Sbjct: 98 LM-----AHANSSASPARHPVRA--------------LILTPTRELADQVA---DNVKAY 135 Query: 123 MRR--VRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 R +R V + GG+ Q L EI++ATPGRL+DH++ ++ SQ QILV+DEA Sbjct: 136 SRHTPLRSVVVFGGVDMAPQTAALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEA 195 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 DRMLDMGF+ D+++I+ P RQ ++FSAT + +A +P+TI++A S+ E Sbjct: 196 DRMLDMGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAE 255 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 N+ Q V+ V++ K + +++R+ + Q ++F+ TK A +A +L G A+A+HG Sbjct: 256 NVTQIVYKVEE-GDKGDAVSYIIRERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHG 314 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 D Q R L + + G + +LVATDVAARG+D+ + V NYDLP AEDYVHRIGRTG Sbjct: 315 DKSQAERMAALEAFKNGTIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTG 374 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKTAAP----RSPRKPGGW 416 RAG +G AISL + + + IE+ K + GF P A RSPR+ Sbjct: 375 RAGASGDAISLYSDKDARLLVDIEKMIKHKFVPAQLAGFVPAGNRASERKERSPRRDDSE 434 Query: 417 RPGDG--RSNSGPRFGAGNREGGG 438 G G R S PR +G R+ G Sbjct: 435 SRGRGSERRESAPREASGGRDPGS 458 >gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 778 Score = 300 bits (767), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 165/395 (41%), Positives = 233/395 (58%), Gaps = 30/395 (7%) Query: 3 FEALGLNPSIIKALTEAGYTAPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSLHQ 62 F L L+ +++ L E GY +P+P+Q IP ++ +D+L +QTG+GKTA+F LP L + Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68 Query: 63 LADLPQAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYGAY 122 + D+ Q P+ LVL PTRELA+QV A +Y Y Sbjct: 69 I-DIKQT--------------------------TPQALVLAPTRELAIQVAEAFQRYATY 101 Query: 123 MRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADR 182 + V+ I GG Y Q+ L R ++V TPGR+IDH+E G +D S+++ +VLDEAD Sbjct: 102 IPGFHVLPIYGGQSYGAQLSALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADE 161 Query: 183 MLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHENI 242 ML MGFIDD+E I+ TP +RQT LFSAT+ + +A +P I +A+ + +NI Sbjct: 162 MLRMGFIDDVETILQKTPESRQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNI 221 Query: 243 MQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHGDM 302 QR V + K L +L + D +IF TK + +A +L GF+AAA++GD+ Sbjct: 222 RQRYWLVSGM-QKLDALTRILEAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDI 280 Query: 303 HQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTGRA 362 Q R RT+ L+ G++ +LVATDVAARG+DV I+HV NYD+P E Y HRIGRTGRA Sbjct: 281 QQQQRERTIQQLKDGKIDILVATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRA 340 Query: 363 GRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVE 397 GR+G AI + E +K IER T+Q P+ V+E Sbjct: 341 GRSGEAILFIAPRERNLLKAIERATRQ--PISVLE 373 >gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille] Length = 478 Score = 221 bits (564), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 145/429 (33%), Positives = 219/429 (51%), Gaps = 41/429 (9%) Query: 2 TFEALGLNPSIIKALTEAGYTAPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSLH 61 +F +L L+P+++ L GY TP+Q +++P + +DL+ ++TGSGKTAAF + L Sbjct: 20 SFSSLALSPAMLSNLDSLGYREMTPIQAQSLPVILELRDLIAQAKTGSGKTAAFGIGLLQ 79 Query: 62 QLADLPQAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYGA 121 +L A QA LV+ PTRELA QV+ + Sbjct: 80 KLNPTWFAVQA---------------------------LVICPTRELADQVSNELRRLAR 112 Query: 122 YMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEAD 181 ++V+++ GG P Q+ L I+V TPGR+ DH+ I+ S++Q LVLDEAD Sbjct: 113 ATENIKVLTLCGGAPMRPQIASLEHGAHIVVGTPGRIRDHISRETINLSKVQTLVLDEAD 172 Query: 182 RMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHEN 241 RM+DMGF ++I IV+A P RQT+LFSAT + + +P+ I++ + +H++ Sbjct: 173 RMVDMGFYEEIAGIVSACPTRRQTLLFSATYPDDIRRASAEFLRDPVEIKVEA---QHDD 229 Query: 242 --IMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALH 299 I QR + V D +N + LL+ + F TK +A L GF+A AL+ Sbjct: 230 SQIEQRFYAV-DYDDRNAAVATLLKHYRPVSTLAFCNTKIHCRELAAELRAQGFSALALY 288 Query: 300 GDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRT 359 G++ Q R+ L +LVATDVAARG+D+ + V N D+ K E ++HRIGRT Sbjct: 289 GELEQRERDEILVLFANQSCSVLVATDVAARGLDIQSLGAVINVDVSKDTEVHIHRIGRT 348 Query: 360 GRAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKTAAPRSPR-------- 411 GR G+A+SL E VK IE + + + ++ E + +P Sbjct: 349 GRGQDKGLALSLCAPNEKKWVKLIEEYQNKPVQWFDLKDLEVAEGGDLHAPMVTLCIMGG 408 Query: 412 KPGGWRPGD 420 K RPGD Sbjct: 409 KKDKLRPGD 417 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 993,607 Number of extensions: 38510 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 6 Length of query: 500 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 413 Effective length of database: 899,382 Effective search space: 371444766 Effective search space used: 371444766 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)