BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3376.p
         (260 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980030|ref|YP_001352893.1| enoyl-[acyl-carrier protein] re...   457   e-130
gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc...    55   4e-09

>gi|152980030|ref|YP_001352893.1| enoyl-[acyl-carrier protein]
           reductase (NADH) [Janthinobacterium sp. Marseille]
          Length = 262

 Score =  457 bits (1176), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/258 (87%), Positives = 236/258 (91%)

Query: 1   MAFLQGKKILITGLLSNRSIAYGIAQACKREGAELAFTYVGERFKERITKFAEEFDSKLV 60
           MAFLQGKKILITGLLSNRSIAYGIA ACKREGAELAFTYVGERFK+RIT+FA+EFDS LV
Sbjct: 1   MAFLQGKKILITGLLSNRSIAYGIAAACKREGAELAFTYVGERFKDRITEFAKEFDSSLV 60

Query: 61  FDCDVSSDEQINALFADLGKSWSQLDGLVHAIGFAPSEAIAGDFLEGFSREGFKIAHDIS 120
           FDCDV SDEQI ALFADLGKSW  LDGLVHAIGFAP EAIAGDFL+G SREGFKIAHDIS
Sbjct: 61  FDCDVGSDEQITALFADLGKSWDHLDGLVHAIGFAPREAIAGDFLDGISREGFKIAHDIS 120

Query: 121 AYSFPAMAKAAMPLLSSNAALLTLTYLGSERVVPNYNTMGLAKASLEASVRYLAESLGPK 180
           AYSFPAMAKAA+P+L  NAALLTLTYLGS R +PNYNTMGLAKASLEASVRY+AESLGPK
Sbjct: 121 AYSFPAMAKAALPMLRPNAALLTLTYLGSMRALPNYNTMGLAKASLEASVRYMAESLGPK 180

Query: 181 GVRVNGVSAGPIKTLAASGIKGFGKILGAVAATAPLRRNVTIEDVGNASAFLLSDLASGI 240
           GVRVNG+SAGPIKTLAASGIK F KIL  V   APLRRNVTIEDVGN +AFLLSDL+ GI
Sbjct: 181 GVRVNGISAGPIKTLAASGIKDFSKILNFVKTHAPLRRNVTIEDVGNTAAFLLSDLSGGI 240

Query: 241 TGEITYVDGGFSRVVGGM 258
           TGEITYVDGGFS VVGGM
Sbjct: 241 TGEITYVDGGFSHVVGGM 258


>gi|152981530|ref|YP_001353550.1| short chain
           dehydrogenase/reductase family oxidoreductase
           [Janthinobacterium sp. Marseille]
          Length = 249

 Score = 55.1 bits (131), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 25/257 (9%)

Query: 4   LQGKKILITGLLSNRSIAYGIAQACKREGAELAFTYVGERFKERITKFAEEFDSK----L 59
           L GK   + G   +R I   I +   R+GA +AFTYV    K +    A+E ++     L
Sbjct: 7   LTGKVAFVQG--GSRGIGAAIVKRLARDGAAVAFTYVSSADKAK--AVAQEIEAAGGRAL 62

Query: 60  VFDCDVSSDEQINALFADLGKSWSQLDGLVHAIG---FAPSEAIAGDF-LEGFSREGFKI 115
               D S    +        K++ ++D LV+  G    AP E    DF LE F R    +
Sbjct: 63  AIHADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVE----DFKLEDFDR---TV 115

Query: 116 AHDISAYSFPAMAKAAMPLLSSNAALLTLTYLGSERV-VPNYNTMGLAKASLEASVRYLA 174
           A ++ +  F A  +AA  +      ++T+    ++R+         ++KA++    + LA
Sbjct: 116 AVNVRSV-FVATQEAARHM-GEGGRIITIGSTNADRMPFAGGAVYAMSKAAIVGLTKGLA 173

Query: 175 ESLGPKGVRVNGVSAGPIKTLAASGIKGFGKILGAVAATAPLRRNVTIEDVGNASAFLLS 234
             LGP+G+ VN V  GP+ T        F   L  + A     ++   E++ +  A+L  
Sbjct: 174 RDLGPRGITVNNVQPGPVDTDMNPANSDFADTLKGLMAIGRYGKD---EEIASFVAYLAG 230

Query: 235 DLASGITGEITYVDGGF 251
             A  ITG    +DGGF
Sbjct: 231 PEAGYITGASLTIDGGF 247


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 558,722
Number of extensions: 22110
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 3
Length of query: 260
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 179
Effective length of database: 921,564
Effective search space: 164959956
Effective search space used: 164959956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)