BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3375.p (605 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981157|ref|YP_001352894.1| ABC transporter, periplasmic su... 836 0.0 gi|152982754|ref|YP_001351954.1| ABC-type transport system, peri... 77 3e-15 >gi|152981157|ref|YP_001352894.1| ABC transporter, periplasmic substrate-binding protein [Janthinobacterium sp. Marseille] Length = 606 Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/578 (68%), Positives = 470/578 (81%), Gaps = 6/578 (1%) Query: 34 LYDTPKYGPGFTHFDYVNPDAPKRGTLYLANPDRRTSFDKFNPFSLKGVAAAGVEPFMFE 93 LYDTPKY PGFTHFD+VNPDAPK G L+LANPDRRTSFDKFNPFS+KGV+AAG+ MFE Sbjct: 29 LYDTPKYPPGFTHFDFVNPDAPKGGELFLANPDRRTSFDKFNPFSMKGVSAAGLTHLMFE 88 Query: 94 TLAVGSA------DEVASMYGLLADDMVLAPDRRSMRFHLNPKARFNNGDPVTAADVKYS 147 +LA S+ DEVA+MYGLLA+DM L+ DR SM F LNPKARFNNGDPV A+DVKYS Sbjct: 89 SLATSSSGSEAITDEVATMYGLLAEDMELSADRMSMTFRLNPKARFNNGDPVLASDVKYS 148 Query: 148 FDTLMTKGAPQFKSVFADVERCVVIDPMTVRFDFKNDNRELPLIVGGLPVFSPKWGAGTP 207 FDTL+ K APQ KS+ A+V++CVV++ TVRFDFK NRE+PLIVG +PVFS KW AGT Sbjct: 149 FDTLVAKSAPQVKSLLANVKQCVVLNERTVRFDFKALNREMPLIVGSVPVFSRKWAAGTD 208 Query: 208 FDRIQLTAPIASGPYAIESYDLGRSIVYRRRADYWGNDLPSRRGMYNFARIAYRFYKDDL 267 FD+IQL PI +GPY I+ +D GRSI Y+ DYWG D+P+R+GMYNF RI YRFYKDD+ Sbjct: 209 FDKIQLIPPITTGPYLIDRFDTGRSISYKLNPDYWGRDIPTRKGMYNFGRINYRFYKDDV 268 Query: 268 ARLEAFKAGEFDVTVEYSAKNWVRGYTGPKFANGEIIKHAFPHHNGANMQGFVMNLRRPQ 327 ARLEAFKAGEFD+ VE SAKNW R Y GPKF NG IIK H NGA MQGF+MNLRRPQ Sbjct: 269 ARLEAFKAGEFDLVVENSAKNWARSYKGPKFNNGTIIKRELAHSNGAGMQGFLMNLRRPQ 328 Query: 328 FQDPRVRRALGLALDFQWMNRQLFYDQYTRVDSYFANSELAATGTPSAEELKLLEPLRAQ 387 FQD RVR+ALGLALD++WMNRQLF+ Y R+ S+F NS +AATG PSAEEL LLEPLR + Sbjct: 329 FQDVRVRQALGLALDYEWMNRQLFFGSYKRIYSFFNNSPMAATGLPSAEELVLLEPLRKK 388 Query: 388 LPAAVFGPVPAQPDTNPPGSLRANLMQARQLFREAGWTYRDGALRNDKGQVFHMEILDDQ 447 L AVFG P PDTNPPGSLRANL++A +LFR+AGW YRDGALRN KG+VF EI+DDQ Sbjct: 389 LDPAVFGQAPIPPDTNPPGSLRANLLKAVELFRQAGWEYRDGALRNAKGEVFAFEIMDDQ 448 Query: 448 PAMSRVISIYVRNLEKLGVRVNQRTVDYALAQKLLENFEFDMTSLAIPATNSPGSEMFDI 507 AMSRVIS+YVRNL+KLG++V QRT DYAL QK +E+F++DMTS+ P ++PG+EMFD+ Sbjct: 449 SAMSRVISVYVRNLQKLGIQVTQRTADYALLQKRMEDFDYDMTSIRFPDVSTPGNEMFDM 508 Query: 508 FGSRAADESGSNNVWGLKNPAVDQLIGKVVAARSRAELLTATHALDRVLLNLYITVPHWY 567 FGS+AADE GS+N WGLK+PAVD+L+ +VAA SR+EL A ALDRVLLN YI +PHWY Sbjct: 509 FGSKAADEKGSSNFWGLKDPAVDRLVEALVAADSRSELQGAARALDRVLLNKYIVIPHWY 568 Query: 568 SSTHRMAYRNRFGIPAVLPKYYEANPFVVSMWWEEKPR 605 SS+HR+AY RFG+P LP YY+ +P+V+ WW+EK + Sbjct: 569 SSSHRIAYWQRFGMPGKLPLYYQPDPYVIGTWWQEKAK 606 >gi|152982754|ref|YP_001351954.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 585 Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 106/515 (20%), Positives = 200/515 (38%), Gaps = 59/515 (11%) Query: 101 DEVASMYGLLADDMVLAPDRRSMRFHLNPKARFNNGDPVTAADVKYSFDTLMTKGAPQFK 160 DE ++ LA ++PD ++ FHL F++G A V+ + + + P K Sbjct: 114 DEQGNISPWLAKSWEISPDGKTYTFHLRDDVTFSDGVRFNAEAVQVNLEHMRD---PATK 170 Query: 161 SVFADVE-----RCVVIDPMTVRFDFKNDNRELPLIVGG--LPVFSPKWGAGTPFDRIQL 213 S A R ++D T ++ L + SPK P + Sbjct: 171 SPLAAAYIRPYLRGRIVDEYTFEATLSEPYSPFLDVLAQSWLSMISPKQIRENP--KSIA 228 Query: 214 TAPIASGPYAIESYDLGRSIVYRRRADY-WGNDLPSRRGMYNFARIAYRFYKDDLARLEA 272 PI SGP+ +ESY + + +RADY W + +G RI F + + R + Sbjct: 229 EHPIGSGPFVLESYVRAQGANFVKRADYNWAPPVVRHKGPAYLDRIELTFVPEAMIRYSS 288 Query: 273 FKAGEFDVTVEYSAKNWVRGYTGPKFANGEIIKHAFPHHNGANMQGFVMNLRRPQFQDPR 332 ++ + D T++ A+N P ++ P + +N+ + F D + Sbjct: 289 LQSAQSDFTLDAPAQNAQAIRADPALRFHSRVRKGNP------FRSLTLNVEKAPFNDVQ 342 Query: 333 VRRALGLALDFQWMNRQLFYDQYT-RVDSYFANSELAATGTPSAEELKLLEPLRAQLPAA 391 +R+AL LA+D + + + +Y + D ANS Sbjct: 343 IRKALALAIDREGVAWITGFGEYEPKSDFLAANSRYY----------------------- 379 Query: 392 VFGPVPAQPDTNPPGSLRANLMQARQLFREAGWTYRD--GALRNDKGQVFHMEILDDQPA 449 D + +L N+ +A +LF +AGWT RD G D ++ ++ + PA Sbjct: 380 ---------DPSFKNALTYNVAEANRLFDQAGWTTRDDKGYRTKDGKRLSATVLITENPA 430 Query: 450 MSRVISIYVR-NLEKLGVRVNQRTVDYALAQKLLENFEFDMTSLAIPATNSP-GSEMFDI 507 +++ ++ + K+G +N + A+ ++ TN+P G + Sbjct: 431 FPNSVAVAIQADARKVGFELNIELLPLAVITDRRYVGDYQALGGGYWHTNTPDGLYILYH 490 Query: 508 FGSRAADESGSNNVWGLKNPAVDQLIGKVVAARSRAELLTATHALDRVLLNLYITVPHWY 567 S A+++ N L++ +D ++ + + EL R L + +P Y Sbjct: 491 SNSIASEKLIGQNSSRLRDAELDDVLERARKSNDPVELKALYSQAQRRLTEVVPAIPS-Y 549 Query: 568 SSTHRMAYRNRFGIPAVLPKYYEANPFVVSMWWEE 602 S H +AYR+ + V+ P + +W ++ Sbjct: 550 ESIHMIAYRSY--VKGVVFDTSHNTPLFIGVWLDK 582 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,525,546 Number of extensions: 67984 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 2 Length of query: 605 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 516 Effective length of database: 891,988 Effective search space: 460265808 Effective search space used: 460265808 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)