BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3374.p (351 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transp... 588 e-169 gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transp... 124 1e-29 gi|152982533|ref|YP_001351955.1| ABC-type transport systems, per... 120 9e-29 gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport... 112 3e-26 >gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 354 Score = 588 bits (1515), Expect = e-169, Method: Compositional matrix adjust. Identities = 288/354 (81%), Positives = 320/354 (90%), Gaps = 3/354 (0%) Query: 1 MNIWAYILKRILLMIPTLLGVIAITFAVIQFVPGGPVEQMVQELRGR---SGVHESAGGG 57 MN+W+YI+KR+LLM+PTLLGVIAITFAVIQFVPGGPVEQ + EL+G+ G GG Sbjct: 1 MNLWSYIIKRVLLMLPTLLGVIAITFAVIQFVPGGPVEQALVELKGQFGAGGEAGGGGGS 60 Query: 58 GAYRGRQGVDPERVKEIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHADVWALVKSK 117 YRGRQG+D ERV EIKALYGFDKPP+ERFW MLKGFATFDLG+SFYHH DVW LV SK Sbjct: 61 SQYRGRQGIDAERVAEIKALYGFDKPPVERFWQMLKGFATFDLGQSFYHHKDVWDLVVSK 120 Query: 118 MPVSISIGLWTFFITYLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGFVLGVFLLVV 177 +PVSI++G+WTFF+TY IS+PLGIAKAVR GSRFDS+++ VVL+GYSIPGF+LGVFLLV+ Sbjct: 121 LPVSITLGMWTFFLTYFISLPLGIAKAVREGSRFDSLSTIVVLIGYSIPGFILGVFLLVM 180 Query: 178 FGGGSFLQWFPLRGLTSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATMTMLTKNTFL 237 FGGGSF+QWF LRGLTSDNWEQLS GK+ DYLWHI LP+ ASVAG+FA MTMLTKNTFL Sbjct: 181 FGGGSFVQWFSLRGLTSDNWEQLSLLGKVLDYLWHIALPVTASVAGSFAMMTMLTKNTFL 240 Query: 238 EEIRKQYVLTARAKGLSERRVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLD 297 EEIRKQYVLTARAKGLSE RVLYKHVFRNALIPLVTGFPAAFIGAFF GSLLIETLFSLD Sbjct: 241 EEIRKQYVLTARAKGLSENRVLYKHVFRNALIPLVTGFPAAFIGAFFTGSLLIETLFSLD 300 Query: 298 GLGLLSYESVLRRDYPVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRVQFESLAK 351 GLGLLSYESV+RRDYPVVMGTLYLFTL+GLVVKL+GDLCYVW DPR+QFESL + Sbjct: 301 GLGLLSYESVIRRDYPVVMGTLYLFTLVGLVVKLLGDLCYVWADPRLQFESLNQ 354 >gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transport system permease) ABC transporter protein [Janthinobacterium sp. Marseille] Length = 325 Score = 124 bits (310), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 15/286 (5%) Query: 69 ERVKEIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHADVWALVKSKMPVSISIGLWT 128 ER + I A +G DKP +++++ ++ + DLGRSF L+ ++P ++ + + Sbjct: 46 ERARTIAA-FGLDKPLWQQYFIFIQNAVSGDLGRSFAFGTSALGLILERLPATMELAISA 104 Query: 129 FFITYLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGFVLGVFLLVVFGGGSFLQWFP 188 I+ ++ +PLG+ +R S AV ++G+S+P F +G+ L++VF L W P Sbjct: 105 ILISIVLGIPLGLWAGLRPHSWIGKSIMAVSILGFSLPTFWVGLMLIMVFAVQ--LGWLP 162 Query: 189 LRG------LTSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATMTMLTKNTFLEEIRK 242 G L LSW D L H+ LP + A + LT+ E + + Sbjct: 163 ASGRGETTLLLGIPVSFLSW-----DGLKHLLLPSLNLALFNIALVIRLTRAGAQEALLQ 217 Query: 243 QYVLTARAKGLSERRVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLGLL 302 YV ARAKGL R++ HV +N LIP+VT F G+ A +++ E++F+ G+G L Sbjct: 218 DYVKFARAKGLRNSRIIGVHVLKNILIPIVTVIALQF-GSIIAFAIVTESVFAWPGMGKL 276 Query: 303 SYESVLRRDYPVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRVQFES 348 +S+ D PV++ L L + +++ LI D+ Y +DPRV+ Sbjct: 277 IIDSIRVLDRPVIVAYLMLIVALFILINLIVDVAYSLLDPRVRLSD 322 >gi|152982533|ref|YP_001351955.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 310 Score = 120 bits (302), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/279 (29%), Positives = 138/279 (49%), Gaps = 23/279 (8%) Query: 69 ERVKEIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHADVWALVKSKMPVSISIGLWT 128 E + +++ YG D P L ++ + A DLG S+ V V ++ ++ + L Sbjct: 51 EVLAQVRKEYGLDDPLLTQYGNYIARLAKGDLGESYRLRIPVLKAVTQQLGATVQLALSA 110 Query: 129 FFITYLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGFVLGVFLLVVFGGGSFLQWFP 188 ++ ++SV + + A RA SI S L S P FV+G+ LL+VF + WFP Sbjct: 111 GVLSIVLSVVIALLTARRA-PWIRSIVSGAELTITSAPSFVIGILLLLVFS--FYFHWFP 167 Query: 189 LRGLTSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATMTMLTKNTFLEEIRKQYVLTA 248 G S W L LP IA +T + + + + + ++LTA Sbjct: 168 ASG--SQGWRAL-------------VLPTIALALPVAGVLTQVLRQALEDVLEQPFILTA 212 Query: 249 RAKGLSERRVLYKHVFRNALIPLVT--GFPAAFIGAFFAGSLLIETLFSLDGLGLLSYES 306 RA+G+S+ V +H R+AL+PLVT GF + G++++E LF+ G+G L ++ Sbjct: 213 RARGMSDAGVRLRHALRHALVPLVTLSGF---VFASLLGGAVVVEMLFARQGVGRLMLDA 269 Query: 307 VLRRDYPVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRVQ 345 +D P+V+G L I ++V ++ D+ Y +DPRV+ Sbjct: 270 ANTKDVPIVLGITLLAAFIYVIVNIVVDVLYSLIDPRVR 308 >gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 316 Score = 112 bits (280), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/342 (25%), Positives = 153/342 (44%), Gaps = 28/342 (8%) Query: 3 IWAYILKRILLMIPTLLGVIAITFAVIQFVPGGPVEQMVQELRGRSGVHESAGGGGAYRG 62 +++YILKR+L IP L V ++F ++ PG P+ + Sbjct: 1 MFSYILKRLLYAIPIALSVTLLSFMLVYLAPGDPLNAIAPADAPAD-------------- 46 Query: 63 RQGVDPERVKEIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHADVWALVKSKMPVSI 122 + +K+ YG DKP ++ + L DLG S V V S + ++ Sbjct: 47 -------VIAALKSAYGLDKPVPVQYGMWLSRAVQGDLGTSIASGRQVVTEVMSAVSNTL 99 Query: 123 SIGLWTFFITYLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGFVLGVFLLVVFGGGS 182 + FI L LG G D I + + ++G S+P + LG+ L ++F Sbjct: 100 LLAGVAGFIGVLFGCVLGALAGYWHGGWIDRIATFLSVIGVSVPHYWLGLVLTIIFS--I 157 Query: 183 FLQWFPLRGLTSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATMTMLTKNTFLEEIRK 242 +L WFP G + W D++ H+ LP I +T + + + + Sbjct: 158 WLGWFPAMGAGPGGSSEWLWD---YDHIRHLVLPAITLAVIPMGIITRTVRALVADMLEQ 214 Query: 243 QYVLTARAKGLSERRVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLGLL 302 ++V+ RA+GLS R + ++H+ +N P V IG GS+L+ET+F+ G G L Sbjct: 215 EFVIALRARGLSNRAI-FRHIAKNT-APTVLAVAGLQIGYLMGGSILVETVFAWPGTGFL 272 Query: 303 SYESVLRRDYPVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRV 344 ++ +RD P++ GT+ + + + + LI D+ +DPR+ Sbjct: 273 LNTAIFQRDMPLLQGTILVLCMFFVGLNLIVDILQPLLDPRM 314 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.144 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 717,238 Number of extensions: 25427 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 4 Length of query: 351 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 267 Effective length of database: 910,473 Effective search space: 243096291 Effective search space used: 243096291 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)