BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3373.p (355 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transp... 533 e-153 gi|152981314|ref|YP_001351949.1| ABC-type transport systems, per... 136 2e-33 gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide... 130 2e-31 gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport... 105 3e-24 >gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 347 Score = 533 bits (1374), Expect = e-153, Method: Compositional matrix adjust. Identities = 268/347 (77%), Positives = 312/347 (89%) Query: 9 MPTTSSTPSISPGRRIWLRFRANRTGYWSLLIFSVLFVLSLGAELFSNDKPLVASYQGHI 68 M ++ +SPGRR+WLRF+ +R GYWSL+IFS+L V+SL AEL SNDKPLVA Y G + Sbjct: 1 MNAIATAAPVSPGRRVWLRFKKSRRGYWSLIIFSILVVISLLAELLSNDKPLVARYNGEL 60 Query: 69 IFPMFKDYSDKSFGGDFDTPADYLDPFIQDQFKKNGNWALYPLNRYNHETLNYFAKSPNP 128 +FP+ K YS+K FGGDF++PADYLDPFI+DQFKK+GNWA+YPLN Y+++TLNYFA SPNP Sbjct: 61 VFPIVKTYSEKKFGGDFESPADYLDPFIRDQFKKDGNWAIYPLNHYHYDTLNYFATSPNP 120 Query: 129 APPSADNWLGTDDRGRDVFARLLYGFRLSVLFGLALTAIGVVLGVLAGAIQGYFAGRTDL 188 APPSA+NWLGTDDRGRDV ARLLYGFR+SVLFGLALT GV+LG++ GAIQGYFAG+TDL Sbjct: 121 APPSAENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLITGAIQGYFAGKTDL 180 Query: 189 VIQRLLEIWGSMPELYLLIIFFSIFQPSLLVLLVLMAAFGWMDLADYLRAEFLRNRNLDY 248 QR +EIWG+MPELYLLIIF SIFQPS+ +LL+L++ FGWM L+DY+RA+FLRNRNL+Y Sbjct: 181 FFQRFMEIWGAMPELYLLIIFASIFQPSIGLLLILLSLFGWMSLSDYVRADFLRNRNLEY 240 Query: 249 VQAARAMGLSNRQIIWRHVLPNSMTTVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLG 308 VQAARA+GLSN QIIWRHVLPNS+T VVTFLPFRMS +ILALTSLDFLGLGVPPST SLG Sbjct: 241 VQAARALGLSNGQIIWRHVLPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPPSTASLG 300 Query: 309 ELLSQGKNNLDAWWIALSTFLVLTVTLLLLTNIGDALRNALDVRRKA 355 ELL+QGKNNLDAWWIALSTF+VLTV LLLLTNIGDALRN+LDVRRKA Sbjct: 301 ELLAQGKNNLDAWWIALSTFVVLTVMLLLLTNIGDALRNSLDVRRKA 347 >gi|152981314|ref|YP_001351949.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 303 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 124/216 (57%), Gaps = 1/216 (0%) Query: 131 PSADNWLGTDDRGRDVFARLLYGFRLSVLFGLALTAIGVVLGVLAGAIQGYFAGRTDLVI 190 PSA +WLGTD+ GRDV+ RL+YG + S+L GLA TAIG+ +G+ G G D + Sbjct: 79 PSAAHWLGTDENGRDVWTRLIYGVQPSLLMGLAATAIGLSIGIAVGLFAGLGHRIIDNFL 138 Query: 191 QRLLEIWGSMPELYLLIIFFSIFQPSLLVLLVLMAAFGWMDLADYLRAEFLRNRNLDYVQ 250 RL+++ + P+L L ++ + + L+ ++ + A +RA+ RN YV+ Sbjct: 139 MRLIDVLLAFPDLLLALVIITFWGQGLVNAVIAVGVASVPRYARMVRAQTHIVRNAQYVE 198 Query: 251 AARAMGLSNRQIIWRHVLPNSMTTVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLGEL 310 AA +GL +I RHVLPN++ ++ + I A +L FLG G PP +P G + Sbjct: 199 AAVTLGLRRSTVIIRHVLPNAIKPILILATIGIGGKIAAGAALSFLGFGAPPPSPEWGSM 258 Query: 311 LSQGKNNL-DAWWIALSTFLVLTVTLLLLTNIGDAL 345 LS G+N L +AWW+ + + +T+T++ +T +G L Sbjct: 259 LSVGRNFLSNAWWLVAAPGVAVTLTVVSITALGREL 294 >gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Janthinobacterium sp. Marseille] Length = 301 Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 141/249 (56%), Gaps = 6/249 (2%) Query: 110 PLNRYNHETLNYFAKSPNPAPPSADN----WLGTDDRGRDVFARLLYGFRLSVLFGLALT 165 P N Y+ ++ P + D+ LGTD++GRD+ + +LYG R+S++ G+ T Sbjct: 49 PQNPYDLAQIDIMDSRLEPGKQNIDHSLTYVLGTDEQGRDMLSAILYGVRISIIVGVVST 108 Query: 166 AIGVVLGVLAGAIQGYFAGRTDLVIQRLLEIWGSMPELYLLIIFFSIFQPSLLVLLVLMA 225 AI +++G+ G GYF GR + +I R+ +I S P + + +I ++ P + +++ + Sbjct: 109 AIALLIGLTLGLFAGYFGGRIESLIMRIADIQLSFPPILVALILLALMGPGIGKIIIALV 168 Query: 226 AFGWMDLADYLRAEFLRNRNLDYVQAARAMGLSNRQIIWRHVLPNSMTTVVTFLPFRMSA 285 A W A R+ L R +Y++AA +GLS + ++ H+LPN + ++ ++++ Sbjct: 169 AVQWAYYARTARSAALVERKKEYIEAATGLGLSPLRTVFHHLLPNCLPPLIVIAALQVAS 228 Query: 286 SILALTSLDFLGLGVPPSTPSLGELLSQGKNNL--DAWWIALSTFLVLTVTLLLLTNIGD 343 +I +L FLG+G+P + PSLG L++ G + + +WI+L + L +T++ + + D Sbjct: 229 AISLEATLSFLGIGLPVTEPSLGLLIANGFDYMMSGKYWISLFPGIALLLTVVAINLVAD 288 Query: 344 ALRNALDVR 352 LR+ L+ R Sbjct: 289 QLRDVLNPR 297 >gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 298 Score = 105 bits (263), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 124/231 (53%), Gaps = 17/231 (7%) Query: 132 SADNWLGTDDRGRDVFARLLYGFRLSVLFG----LALTAIGVVLGVLAGAIQGYFAGRTD 187 S LGTD+ GRD+ +RL+YG RLS+L G LA IG +G+LA GY GR + Sbjct: 76 SEGYLLGTDELGRDMLSRLMYGGRLSLLMGVTPVLAAFGIGTSIGLLA----GYVGGRLN 131 Query: 188 LVIQRLLEIWGSMPELYLLIIFFSIFQPSL---LVLLVLMAAFGWMDLADYLRAEFLRNR 244 ++I R+L+++ + P + L + P + ++ L L+ + +A+ + + R Sbjct: 132 MIIMRVLDVFYAFPSVLLAVAISGALGPGMTNSILALTLVFVPQVVRVAESVTTQV---R 188 Query: 245 NLDYVQAARAMGLSNRQIIWRHVLPNSMTTVVTFLPFRMSASILALTSLDFLGLGVPPST 304 LDY++AAR G S II HVL N + V + +S S++ L FLGLGV P Sbjct: 189 KLDYIEAARMSGASAFSIIRVHVLGNVLGPVFVYATGLLSVSMILAAGLSFLGLGVKPPE 248 Query: 305 PSLGELLSQGKNNL--DAWWIALSTFLVLTVTLLLLTNIGDALRNALDVRR 353 P G +L+ ++ + + W AL L+ +T + + D +R+A+D+RR Sbjct: 249 PEWGLMLNTLRSAIFRNPWVAALPGLLIF-ITSIGFNLLADGVRSAMDIRR 298 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.140 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 759,346 Number of extensions: 31755 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 4 Length of query: 355 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 271 Effective length of database: 910,473 Effective search space: 246738183 Effective search space used: 246738183 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)