BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3371.p
         (498 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979878|ref|YP_001352898.1| membrane-bound lytic murein tra...   650   0.0  

>gi|152979878|ref|YP_001352898.1| membrane-bound lytic murein
           transglycosylase D precursor [Janthinobacterium sp.
           Marseille]
          Length = 531

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/483 (67%), Positives = 385/483 (79%), Gaps = 26/483 (5%)

Query: 21  LSYANDISIYPAPFNAI-------NPELAGNALPGM---NDIDIWTRIRKGFGIPDL-DN 69
           LS+A+D+S+   P+N +       NP LA + L      +D+D+W RIRKGF IPDL DN
Sbjct: 33  LSHASDLSL--PPYNWVQDAALQDNPSLANDPLSEFVVASDVDVWARIRKGFAIPDLTDN 90

Query: 70  ALVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIESAFNPEALS 129
            LV +QT WYSSRPDYI RTT RAS YL+HVV+ELEKRGMPTELALLPFIESAFNP+A S
Sbjct: 91  QLVINQTIWYSSRPDYIGRTTKRASLYLYHVVEELEKRGMPTELALLPFIESAFNPQAYS 150

Query: 130 TAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFGDWQLALAAY 189
           TAKAAGMWQFIPSTGRD+NLKQNMF DERR VLASTDAALTYLQKLYGMFGDWQLALAAY
Sbjct: 151 TAKAAGMWQFIPSTGRDFNLKQNMFKDERRSVLASTDAALTYLQKLYGMFGDWQLALAAY 210

Query: 190 NWGEGSVQRAVNRNLAAGLPIDFNTLSAQMPAETRNYVPKLQAVKNIIANPAAYDIALPK 249
           NWGEGSVQRA+ +  AAG+  DFN+LSA MPAETRNYVPKLQAVKNIIA+P AY I L K
Sbjct: 211 NWGEGSVQRAIRKAEAAGVGTDFNSLSAYMPAETRNYVPKLQAVKNIIASPDAYGITLLK 270

Query: 250 VDNQPYFVTIGKTRNIDVKVAAQLAELSVDEFKALNPQFNRPVIIGGDDTKILLPESNAE 309
           VDNQPYFV+I KTR+IDVK+AAQLAEL +DEFKALNPQFNRPVI G  +T+ILLP+SNAE
Sbjct: 271 VDNQPYFVSIAKTRDIDVKLAAQLAELPMDEFKALNPQFNRPVITGSSNTQILLPQSNAE 330

Query: 310 KFKANMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPRMVLKAGSTI 369
           KFKAN++KW+ A S+WTAH V++ARERIETIA+KF TTP+VIR VN IPP+M+LKAGST+
Sbjct: 331 KFKANLAKWSHALSSWTAHKVTNARERIETIAAKFHTTPQVIREVNNIPPKMLLKAGSTV 390

Query: 370 LVPKNEETAALDTDLTPELADNARLAIAPDVPETRRIYVKAGKRDTLAGIAGRYHVSVAQ 429
           LVP+ +ETA    D+T E+ADNA LA+ PDVP+T+RI V   K+DT+  +A RY VS+AQ
Sbjct: 391 LVPRTDETA--QKDITQEVADNATLAMTPDVPDTKRINVVVKKKDTINTLASRYKVSIAQ 448

Query: 430 LKEWNGLKRDTLAAGQSLQLHVPNAAARSTPTRVASHHRAAPARRQVASAKAPVRKAAPA 489
           +K WN L  D LA+GQ L++HVP  A       V +  +AAP +    +   P ++A+  
Sbjct: 449 IKSWNNLSHDKLASGQKLEIHVPYKA-------VVAKSKAAPGK----TVAKPTKQASRT 497

Query: 490 PAR 492
           PA+
Sbjct: 498 PAK 500


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,109,335
Number of extensions: 46035
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 411
Effective length of database: 899,382
Effective search space: 369646002
Effective search space used: 369646002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)