BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3369.p
         (264 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982721|ref|YP_001352900.1| hypothetical protein mma_1209 [...   364   e-102

>gi|152982721|ref|YP_001352900.1| hypothetical protein mma_1209
           [Janthinobacterium sp. Marseille]
          Length = 256

 Score =  364 bits (934), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 168/254 (66%), Positives = 195/254 (76%)

Query: 9   ANVNNAEIIDLAAWLQTPIGNYLRQWEQRHLNTLTADIFGFNAVQIGSPQIHALQANRMP 68
            +     II L  WL+TP GNY+R WE   L+ LT DIFGFNA QIG PQI AL+ANRMP
Sbjct: 3   TSSTEKSIISLGPWLETPTGNYVRDWEHARLDELTVDIFGFNATQIGLPQIDALRANRMP 62

Query: 69  YRWLTDNRMPVDGQSELEIPQVVTHNFGELPFATQSLDLVVLPHVLEFAAEPHQVLREVE 128
           + WLTD   P  G      P VV  +F ELP+A+ S+DLV+LPH LEFA EPHQVLREVE
Sbjct: 63  HTWLTDTGFPAKGHDNEAHPLVVVQDFEELPYASASIDLVILPHALEFAKEPHQVLREVE 122

Query: 129 RVLIPEGQVIICGFNPSSLWGMRQAAGRLTGAHFLPRDGEFIRLPRLKDWLKLLNMEVNR 188
           RVLIPEGQVIICGFNP S WG RQ  GRL+ ++FLP+ GEFI LPR+KDWLKLLNMEV+ 
Sbjct: 123 RVLIPEGQVIICGFNPYSFWGARQIIGRLSESYFLPQQGEFISLPRVKDWLKLLNMEVSG 182

Query: 189 GHFGCYAPPCETTQWLDRFGFMEKAGDRWWPYFGAVYIVQAIKRVPGMRLIGPALQRQKL 248
           G+FGCYAPPCET +WLDRF F+E  G+RWWPY GAVY+VQA+KRV GM LIGPA + QK 
Sbjct: 183 GYFGCYAPPCETQKWLDRFTFLENVGERWWPYLGAVYVVQAVKRVRGMHLIGPAWKTQKA 242

Query: 249 QAPRGVPVTNRIHR 262
            AP+GVP TN+IH+
Sbjct: 243 AAPQGVPATNKIHK 256


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 674,994
Number of extensions: 28109
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 182
Effective length of database: 917,867
Effective search space: 167051794
Effective search space used: 167051794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)