BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3367.p
         (245 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subu...   326   8e-91
gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558 [...    60   1e-10

>gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit
           [Janthinobacterium sp. Marseille]
          Length = 235

 Score =  326 bits (836), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 164/233 (70%), Positives = 195/233 (83%), Gaps = 4/233 (1%)

Query: 1   MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHLYINPERDSEEGALAVHGLT 60
           MRQI+LDTETTGL+PR+G+RI+EIGCVE++NR+L+G N H YINPERDSEEGALAVHGLT
Sbjct: 1   MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPERDSEEGALAVHGLT 60

Query: 61  TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDIGFLDAELALLGLPPFKEHVSDVVDS 120
           TEFL+DKP F +IAAEF DY+ GA +IIHNAPFDIGFLDAEL  +  P FKEHV +V+D+
Sbjct: 61  TEFLSDKPKFAEIAAEFRDYISGADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEVIDT 120

Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180
           L  AKE+HPG+RNSLDALCDRYGISNAHR LHGALLDAELLAEVYL+MTRGQNSL+MDLG
Sbjct: 121 LVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSMDLG 180

Query: 181 AEEDVTEGEDGK-LELAPLAEVIVVTASEEELGLHEEVLNQLDKEARGSCVWR 232
           A  DV  G DG+ LE+  +A V ++ A+ EEL  H  ++  LDK+ +G  VWR
Sbjct: 181 A-SDV--GSDGQVLEVVAIAPVQLLAATAEELAAHAAMVESLDKQVKGQSVWR 230


>gi|152979979|ref|YP_001352248.1| hypothetical protein mma_0558
           [Janthinobacterium sp. Marseille]
          Length = 195

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 4   IILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHLYINPERDSEEGALAVHGLTTEF 63
           I +D ETTG +  N +RI EIG V V +          ++NP R   E    + G++ E 
Sbjct: 8   IFVDLETTGANLVN-DRITEIGIVAV-DPDGCIDRWSTFVNPGRPIPEFIQGLTGISDEM 65

Query: 64  LADKPTFKQIAAEFLDYVRGAQIIIHNAPFDIGFLDAELALLGLPPFKEHV--SDVVDSL 121
           +   P F+ +A    + ++    I HNA FD GFL       G      HV  ++++ ++
Sbjct: 66  VESAPMFETLADTVRERLQDGLFIAHNARFDYGFLHHAFVRSG------HVLNAEMLCTV 119

Query: 122 QMAKELHPG-RRNSLDALCDRYGISNAHRVLHGALLDAELLAEVY 165
           ++++ L P  ++++LD+L  R+ +    R  H AL DA+LL +++
Sbjct: 120 KLSRALFPAEKKHNLDSLIARHDLIPEAR--HRALADADLLWQLW 162


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 565,205
Number of extensions: 22845
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 164
Effective length of database: 921,564
Effective search space: 151136496
Effective search space used: 151136496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)