BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3360.p
         (493 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacter...   119   5e-28

>gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 195/467 (41%), Gaps = 36/467 (7%)

Query: 4   LGIDLGTSEVKLVLTDPDSNIIATRSARLRVDHPHPLWSEQAPQAWWNATLDAIATLRAT 63
           L ID GT+  + +L + +  I            P P W E    A WN+ L     +   
Sbjct: 6   LAIDQGTTSSRAILFNHEGQIHGVAQQEYPQIFPEPGWVEHDANAIWNSQLAVARQVLKE 65

Query: 64  APQAFQALRGIGISGQMHGATLLDRN-GNVLRPAILWNDMRAHAECVELEALVPDAADI- 121
              +   +  IGI+ Q     + DR  G  +  AI+W D R  A C +L A     AD+ 
Sbjct: 66  NKLSATDIAAIGITNQRETTVIWDRKTGQPIANAIVWQDRRTAAYCDQLRA--EGKADLF 123

Query: 122 ---TGNRAMPGFTAPKLLWLSKYEPAVYRAIDKVLLP----KDYLGWKLTGEFVSEMSDA 174
              TG      F+  K+ WL  + P      ++  L       +L +KL+G  +++ S+A
Sbjct: 124 QQKTGLVLDSYFSGTKVKWLLDHIPDARARAERGELAFGTIDSWLVYKLSGAHLTDSSNA 183

Query: 175 AGTLWLDVARRDWSERMLHATGLSRSHMPRLVEGSAVAGHLREDLRREWGISAPVVVAGG 234
           + TL  ++    W E +L    +  S +P +V  S +A H   +L       AP+ +AG 
Sbjct: 184 SRTLLFNIHTLQWDEELLAIFDIPASLLPAVVASSGIASHTHTEL-----FGAPIAIAGI 238

Query: 235 AGDNAASAVGIGVIQAGDAFLSLGSSGVLFAATAQHAPNPQQGVHAFCHCL--PGQWHQM 292
           AGD  A+  G    + G A  + G+   +   T  HA +    +          G+  Q 
Sbjct: 239 AGDQQAATFGQACHKPGMAKNTYGTGCFMLLNTGTHAISSHNNLLTTIGWTLGIGKAAQT 298

Query: 293 SVILSAA-----ASLHWLA---GVLGREVPELVSAAERLTPEQQAQAPLFLPYLNGERTP 344
           + +L        A + WL    G++ R     V A     P+      +F+P  +G   P
Sbjct: 299 NYMLEGGVFMGGAIVQWLRDGLGIIQRSAD--VEALATSVPDNGG--VVFVPAFSGLGAP 354

Query: 345 HNDAAAKGVLFGMTSAHEAAHLAYAVMEGVAFAMADGYAALQA-AGTVLHSAAFVGGGSR 403
           + D+ A+G + GMT     AH+A A +E +A+   D   A+Q  A +        GG SR
Sbjct: 355 YWDSYARGTILGMTRGSNKAHIARAALESIAYQSVDLLDAMQKDAQSSSQELRVDGGASR 414

Query: 404 SAFWGQLCATALGIPLRHHAGAEVGAALGAARLGRLA----QTGEDV 446
           +    Q  A  L +P+      E   ALGAA L  LA    Q+ E++
Sbjct: 415 NDLLMQFQADILNVPVIRPVVTET-TALGAAYLAGLAVSFWQSAEEI 460


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,171,317
Number of extensions: 47721
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 406
Effective length of database: 899,382
Effective search space: 365149092
Effective search space used: 365149092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)