BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3359.p (293 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982421|ref|YP_001354091.1| AraC family transcriptional reg... 61 8e-11 gi|152981120|ref|YP_001354038.1| transcriptional regulator [Jant... 59 3e-10 gi|152981191|ref|YP_001354772.1| AraC family transcriptional reg... 57 2e-09 gi|152982551|ref|YP_001354048.1| AraC family transcriptional reg... 55 5e-09 >gi|152982421|ref|YP_001354091.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 330 Score = 61.2 bits (147), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 111/260 (42%), Gaps = 37/260 (14%) Query: 34 PEYEVHVITASSGKFFVGDFIGD----FAPGN-LVLTGPNLPHNWVSNLGAGDQLPSRDL 88 P+ ++ ++ GK F G+ + APGN + G +L + + + ++ Sbjct: 91 PQQKIKIVLEKDGKTFQGEMAANSHNIIAPGNGYAVQGFDLINAFYVYI-------KNEI 143 Query: 89 VLQFSRAFAQRVLGAIPELAP-------LQDLLDGAARGLQFPDALGVAITPLMQD-LAQ 140 + + + R L I LAP L LLD L P A T L D LAQ Sbjct: 144 LRELADEIYGRRLDEIDLLAPTETADPSLTYLLDTCKHMLSEP-----AGTNLSSDYLAQ 198 Query: 141 ASGAKRVVLMMAVLEQLASCPQRRPLAGPGYEVHAQRHMSSTINQVLSYIAQNLGGNLRE 200 A V + + QL P+ P + QR V Y+ NL G+ + Sbjct: 199 AI----VACVFSRHSQLRDVPRSADSKVPLSQAQMQR--------VNDYLQANLDGSFQV 246 Query: 201 TDVAELAGMSVSSFTRFFKRHTGSTFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNN 260 D+A + G+S + F F T +T QY LR+N A +LL +LS+ ++ + G+ + Sbjct: 247 ADLAAVIGLSRTIFFERFTVTTKATPNQYLQVLRINRAKQLLRDGKLSLVDIAFACGYAD 306 Query: 261 LSNFNRQFLAYKGMPPSRFR 280 S+ R F + G+ P R+R Sbjct: 307 QSHLARFFKRFVGVAPGRYR 326 >gi|152981120|ref|YP_001354038.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 163 RRPLAGPGYEVH--AQRHMSSTINQVLSYIAQNLGGNLRETDVAELAGMSVSSFTRFFKR 220 +RP + H AQ STI Q+ +Y+ NL +L +AE A MS SF R FK Sbjct: 195 KRPGGQSQFSSHLAAQHTEGSTIGQIQAYVLANLRADLSVPQLAERARMSERSFARTFKA 254 Query: 221 HTGSTFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNNLSNFNRQFLAYKGMPPSRFR 280 +GST + RL++A L+ + + GF+NL + F+ + P+ +R Sbjct: 255 ESGSTPASFVEAARLDQARRLIEEQSQPLKRIAQLCGFSNLDAMRKAFMRRISIGPAEYR 314 >gi|152981191|ref|YP_001354772.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 328 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 55/121 (45%) Query: 173 VHAQRHMSSTINQVLSYIAQNLGGNLRETDVAELAGMSVSSFTRFFKRHTGSTFIQYQNG 232 + Q S + V +Y+ NL +A+ MS + +R FK+ TG T + + N Sbjct: 208 LEVQVKNDSPVAAVQNYVLNNLNVEHTLLSIADEMQMSARNLSRIFKQETGLTLMNFVND 267 Query: 233 LRLNEACELLMCTELSVTEVCYRVGFNNLSNFNRQFLAYKGMPPSRFRALHRLNDEARAV 292 R++ A L T+L +T++ R G N + R F G+ PS +R R + A Sbjct: 268 ARIDAARRYLESTDLGLTDIARRCGLTNAATLRRIFSKRLGIGPSDYRQRFRTEEMPVAA 327 Query: 293 A 293 A Sbjct: 328 A 328 >gi|152982551|ref|YP_001354048.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 153 Score = 55.1 bits (131), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 1/125 (0%) Query: 166 LAGPGYEVHAQRHMS-STINQVLSYIAQNLGGNLRETDVAELAGMSVSSFTRFFKRHTGS 224 +AGP + Q +S + + +V Y L G + ++A GMS +SF + F R Sbjct: 29 MAGPSAAYNGQAPLSEAQMKRVHDYFYNRLHGGFQIAELAATLGMSRTSFFKRFGRTARV 88 Query: 225 TFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNNLSNFNRQFLAYKGMPPSRFRALHR 284 T QY LR+ +A LL L++ E+ + G+ + S+ R F Y M P R+R+ R Sbjct: 89 TPNQYLQILRVEKAKILLRKENLTLIEIAFACGYADQSHLARFFKRYVRMSPGRYRSKIR 148 Query: 285 LNDEA 289 +D A Sbjct: 149 EDDVA 153 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 702,373 Number of extensions: 29334 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 7 Length of query: 293 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 211 Effective length of database: 917,867 Effective search space: 193669937 Effective search space used: 193669937 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)