BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3358.p (415 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 206 2e-54 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 204 6e-54 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 192 2e-50 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 152 2e-38 gi|152981123|ref|YP_001355346.1| ABC-type molybdate transport sy... 146 2e-36 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 206 bits (525), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 108/247 (43%), Positives = 150/247 (60%), Gaps = 3/247 (1%) Query: 1 MADILCQGLSKHYAGGPPVLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MA + + L++ + G V+ + L I+ G+F LLGPSGCGK+T+LRMIAG + G Sbjct: 1 MALLEIRNLTRRF-GDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQ 59 Query: 61 LSIGGKVVNDLPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 + + G + +P +R V VFQNYAL+PHM V NIAF L P AEI ++V E Sbjct: 60 ILLDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALE 119 Query: 121 MLNLETLLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 + L R P +SGGQ+QR +IARA++ P + L DEPLS LDA+LR Q++ ++ L Sbjct: 120 DVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINL 179 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 + + T +YVTHDQ EA+ L+ R+ +M G + Q P +Y YPR+ F A FIGT Sbjct: 180 QKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIGT--C 237 Query: 241 NFLSGVV 247 N GVV Sbjct: 238 NLFDGVV 244 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 204 bits (520), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 124/327 (37%), Positives = 186/327 (56%), Gaps = 23/327 (7%) Query: 4 ILCQGLSKHYAGGPPVLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGTLSI 63 I + + K + G L+ + L G+ LLGPSGCGK+T+LR+IAGLE+ G + + Sbjct: 3 IEVKNIQKQF-GNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 64 GGKVVNDLPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAA------EIDRRVRE 117 G+ + RER V VFQ+YAL+ HM V++NIAFGLR RPAA +I +V + Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLR--VRPAATRPSESQIKEKVTK 119 Query: 118 VAAMLNLETLLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDI 177 + ++ L+ L +R P +SGGQ+QR A+ARA+ P V L DEP LDAK+R +LR + Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 178 KRLHQRLRTTTVYVTHDQLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGT 237 +RLH L T+++VTHDQ EA+ +AD++VLM G++ Q G+P ++Y P + F GF+G Sbjct: 180 RRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFLGN 239 Query: 238 PAMNFLSGVVER---HGQQVAVRCTSQQSQRSQQSQCWV----LHDERFSRLPDGLAVKL 290 +N G V +A + + +V L +R++ +G+ V+L Sbjct: 240 --VNLFHGRVHEGILQSSGIAFEAPEHAETQDTKGIGYVRPHDLEVDRYTTGAEGIVVQL 297 Query: 291 ----AVRPDYVRLAREQDDNRSLTSDV 313 A+ P +L E+DDN L V Sbjct: 298 RRAHAIGP-LAQLELERDDNGELIEAV 323 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 192 bits (489), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 104/243 (42%), Positives = 153/243 (62%), Gaps = 10/243 (4%) Query: 19 VLHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGTLSIGGKVVND-----LPA 73 ++H L + G+ LLG SGCGK+T+LR IAG E + G +++GGK +++ +P Sbjct: 29 IVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTVP- 87 Query: 74 RERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAAMLNLETLLERKPR 133 R+V +VFQ+YAL+PH++V DNI FGLR+L AAE + R+ ++ A++ L+ ++ P Sbjct: 88 EARHVGVVFQDYALFPHLSVSDNIGFGLRKLA--AAERNGRINKLLALVGLQAQEKKFPH 145 Query: 134 AMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLHQRLRTTTVYVTH 193 +SGGQQQR A+ARA+ P + L DEP SNLD LR +L +++ + + + TT V VTH Sbjct: 146 ELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTH 205 Query: 194 DQLEAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAGFIGTPAMNFLSGVVERHGQQ 253 DQ EA +AD++ +MQ G IVQ LY P F A FIG F+ G V++ Q Sbjct: 206 DQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVADFIGLGV--FVPGTVDKQRQD 263 Query: 254 VAV 256 VA+ Sbjct: 264 VAI 266 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 126/211 (59%), Gaps = 6/211 (2%) Query: 4 ILCQGLSKHYA-GGPPV--LHPLDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 I +G+SK ++ GG V L ++L I+ G+FV L+G SGCGKST+LR++AG E S G+ Sbjct: 14 IDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGS 73 Query: 61 LSIGGKVVNDLPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 ++ G + D P+ ER MVFQ+Y L+P + V +NI FG R+ P A+++ Sbjct: 74 ANMYGMPI-DGPSPER--GMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTD 130 Query: 121 MLNLETLLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 M+ L P +SGG +QR AIAR + V L DEP LDA R +L+ D+ + Sbjct: 131 MVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEI 190 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVVLMQGG 211 +R + T V+VTH EA+ L+DRVV+M G Sbjct: 191 WERTKVTVVFVTHAVEEAVMLSDRVVVMTAG 221 >gi|152981123|ref|YP_001355346.1| ABC-type molybdate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 385 Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 124/217 (57%), Gaps = 8/217 (3%) Query: 23 LDLKIDDGQFVVLLGPSGCGKSTMLRMIAGLEEISGGTLSIGGKVVND------LPARER 76 +DL + L GPSG GK+T LR + GLE SG L + G+V D LP +R Sbjct: 46 VDLTLPGRGVTALFGPSGSGKTTCLRAMTGLERFSGSYLEVNGEVWQDDERNIFLPTYKR 105 Query: 77 NVAMVFQNYALYPHMNVYDNIAFGLRRLKRPAAEIDRRVREVAAMLNLETLLERKPRAMS 136 + VFQ +L+ H+NV N+ +G RR+ ++ + A+L++ LL+R P +S Sbjct: 106 PLGYVFQEASLFAHLNVQRNLEYGRRRVSAATHQVS--LEHAVALLDIGHLLQRNPDKLS 163 Query: 137 GGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLHQRLRTTTVYVTHDQL 196 GG++QR AIARA+ +P + L DEPL+ LD+K + ++ ++RLH L +YV+H Sbjct: 164 GGERQRVAIARALATSPRILLMDEPLAALDSKRKEEIMPYLERLHDELDIPVIYVSHSAD 223 Query: 197 EAMTLADRVVLMQGGHIVQAGSPAELYRYPRTLFAAG 233 E LAD +VL++ G ++ +G+ ++L FA G Sbjct: 224 EVARLADHLVLLESGKVIASGATSDLMTRLDLNFAHG 260 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 977,460 Number of extensions: 40415 Number of successful extensions: 323 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 239 Number of HSP's successfully gapped: 68 Length of query: 415 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 329 Effective length of database: 903,079 Effective search space: 297112991 Effective search space used: 297112991 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)