BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3356.p
         (270 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport...    55   5e-09

>gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport
           system permease protein [Janthinobacterium sp.
           Marseille]
          Length = 259

 Score = 54.7 bits (130), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 5/200 (2%)

Query: 51  TLENYRQVIGSPEVLVGLTNSAVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLS 110
           TL+ YR +  + E+L    NS +I   +  + TL+G  A + + RY +   R +Q  +L+
Sbjct: 47  TLDWYRTLFANEEMLRAAGNSLIIALVSSAVSTLLGTMAGFALHRYKI---RLLQVLVLT 103

Query: 111 LRFLPPVAVAIPLIAIWVDLGLYDTRFSMIVTYLLTTLSTITWLSIPVFQRMPREIEEAA 170
              +P + V + L+  +V L L     S+ + ++  ++  +  +       M   + EAA
Sbjct: 104 PIAIPEILVGVSLLIFFVMLNLTLGMLSVTLAHIAFSMGFVAIVVRSRLSGMDESLTEAA 163

Query: 171 TLDGYGPYAVFCKIALPNCAGTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFT 230
              G  P+  F ++ LP     ++ G + +F L  ++ +I      +N++TLP+    ++
Sbjct: 164 RDCGATPWQAFRRVTLPLIMPGVVAGALMAFTLSIDDFVITFFTAGANTSTLPL--QIYS 221

Query: 231 SLGQEVPWGVINASTVLLAL 250
            +   V   V   ST+L+AL
Sbjct: 222 MIKIAVTPEVNAVSTLLMAL 241


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.142    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 539,049
Number of extensions: 20784
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 188
Effective length of database: 917,867
Effective search space: 172558996
Effective search space used: 172558996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)