BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3353.p (462 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 222 4e-59 gi|152982775|ref|YP_001354611.1| two-components system response ... 205 4e-54 gi|152983127|ref|YP_001354752.1| two-component sensor kinase [Ja... 114 2e-26 gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 107 2e-24 gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing... 98 8e-22 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 222 bits (565), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 238/463 (51%), Gaps = 12/463 (2%) Query: 4 SLRLRLLWWLLIPMAAYVGLSTSDAYDNAVASATLVQDRALLASARMMAGQVGWNDGAPV 63 SL +L W+L+P+ LS + Y A + A DRAL ++A QV +G V Sbjct: 64 SLFGEILDWMLVPLLLLWPLSIAITYLVAKSIANEPFDRALEDKVTVVAQQVKEVNGKVV 123 Query: 64 VSIPPAALELFASPAQDAVYYQVRMDDDTLLAGRPDFPAEPDFAALYPVYTTTTFN---G 120 + AA ++ + D VYYQVR ++ G + P D A P T ++ Sbjct: 124 TRLTGAATDILHADDIDNVYYQVRNSFGDVVEGDMEIPLPKDVEAPPPWSTQFRYDFIRN 183 Query: 121 KPLRVVSYIRALFDEGTL-------RMVAVSVGQTMQGRQEMIDDQWHASLRRQMVLLLL 173 +R+ L T R+ V V +T+ R ++++ + + ++L + Sbjct: 184 TEVRIAYIYVDLHKTQTAPQLSIEPRLALVQVAETLDKRSQLVNQIIKGVIVPEFIILPI 243 Query: 174 AMSLVVLGMTMELRPILALKDELTTREPDSLTPLRAGGLQQELRPIVEAINQYIQRLNAQ 233 A+ LV +T LRP++ L+ + R PD L+P+ +G + +E+ P+V ++N+ ++RL+ Sbjct: 244 ALVLVWFALTRGLRPLVELQQRIRERRPDDLSPIDSGYVPEEILPLVGSLNEMLERLSQS 303 Query: 234 VTVQKRFVADAAHQLRTPLAVIDSQIQFARQLEDPARVAQVLAALQEGSRSMTDLTNKLL 293 + VQKRF+ADAAHQ++TPLA + Q + A + D + + L L + S+S T + N+LL Sbjct: 304 IKVQKRFIADAAHQMKTPLAGMRMQSELALRQTDQVEIHKSLEQLAKSSKSATRMINQLL 363 Query: 294 LLSQAEASNSSAFPRAPVDLVAVAALVLEELAGLALKKGIDLGLETTLESALVNGNEAQL 353 L++AE + P P++L +A ++E + K IDLG E +VNG+ L Sbjct: 364 ALARAENQTPTTRPLQPLELSELARDTVQEWVQTSFNKKIDLGFEQPDYHIMVNGDAIML 423 Query: 354 GGLLMNLIDNALRYTPQGGKVTVGL--ENKRSQVIITVTDNGPGIPAEVRERVFERFYRN 411 LL NLIDNAL YTP GG TV + + + + V D GPGI +R+FERFYR Sbjct: 424 RELLNNLIDNALNYTPAGGHATVRVRADEEARLAYLEVEDTGPGIAPHEHKRIFERFYRI 483 Query: 412 AAPDQPGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATVCL 454 + GSGLGLAIVREI Q I + + A CL Sbjct: 484 LGSNVEGSGLGLAIVREIAQQHGAEIDILNNPNCTNPKAPGCL 526 >gi|152982775|ref|YP_001354611.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 470 Score = 205 bits (522), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 142/429 (33%), Positives = 212/429 (49%), Gaps = 12/429 (2%) Query: 36 ATLVQDRALLASARMMAGQVGWNDGAPVVSIPPAALELFASPAQDAVYYQVRMDDDTLLA 95 A V D L AR M V DG + P A +D VYY + D L+A Sbjct: 45 ANDVYDVELNEIAREMLLHVTRKDGQLGFDLSPDAERTLLLDKEDQVYYAIHTTDGKLIA 104 Query: 96 GRPDFPAEPDF-AALYPVYTTTTFNGKPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQE 154 G P+ PA + Y G+ +R+ E V + + +T R Sbjct: 105 GDPNLPAHQTIKSGRETAYYDGILQGQDVRIALLRGKPLLEPPAEAVMIQIAETQVKR-- 162 Query: 155 MIDDQWHASLRRQMVLLLLAMSLVVL-----GMTMELRPILALKDELTTREPDSLTPLRA 209 D+ +L Q++L + + L+ G+ L P+ L+ EL R L+P+ A Sbjct: 163 ---DRHERALLIQLILPQVLLILIAGILIWRGVAHGLSPLRKLQQELAMRSHLDLSPIAA 219 Query: 210 GGLQQELRPIVEAINQYIQRLNAQVTVQKRFVADAAHQLRTPLAVIDSQIQFARQLEDPA 269 + E+ P+V A+N + R++ + Q RF+AD AHQLRTP+A + + + A + DP Sbjct: 220 DNVPGEVEPLVGAVNDLMTRVDGVLGFQGRFIADTAHQLRTPVAGLKAHAELALRETDPV 279 Query: 270 RVAQVLAALQEGSRSMTDLTNKLLLLSQAEASNSSAFPRAPVDLVAVAALVLEELAGLAL 329 +V + L L + ++ L ++LL L++ E N+ A AP DL +A +E LA Sbjct: 280 QVKRALGHLYTSAERLSRLVSQLLSLARNE-PNNVAVNFAPFDLNQLALRTAQEWVPLAY 338 Query: 330 KKGIDLGLETTLESALVNGNEAQLGGLLMNLIDNALRYTPQGGKVTVGLENKRSQVIITV 389 KK IDLG ET ++ L+NG A++ ++ NL+DNA+RYTP GG+VTV + + V Sbjct: 339 KKQIDLGFETAEQTVLLNGEAARVTEMINNLVDNAIRYTPSGGRVTVRVHKDEEGAHLVV 398 Query: 390 TDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQASQGSIRLDAPAQGSGLV 449 +D+G IP + R+R+FERF+R + GSGLGLAIV EI I L+ G G Sbjct: 399 SDDGTRIPIDERQRIFERFHRLLGNHEEGSGLGLAIVHEIATLHNARITLEDDIDGVGNT 458 Query: 450 ATVCLPALP 458 TV P P Sbjct: 459 FTVTFPDTP 467 >gi|152983127|ref|YP_001354752.1| two-component sensor kinase [Janthinobacterium sp. Marseille] Length = 445 Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/287 (29%), Positives = 150/287 (52%), Gaps = 18/287 (6%) Query: 180 LGMTMELRPILALKDELTTREPDSLTPLRAGGLQQELRPIVEAINQYIQRLNAQVTVQKR 239 +G+ L P+ AL L + + L P+ +ELRP+++++NQ + R+++ + Q+ Sbjct: 169 IGIGKGLGPLAALSKTLQKKNANDLAPIADQYASKELRPVIDSLNQMLGRVSSTLVQQRA 228 Query: 240 FVADAAHQLRTPLAVIDSQIQFARQLEDPARVAQVLAALQEGSRSMTDLTNKLLLLSQAE 299 F AAH+LRTPL +I + +Q A+ L + L + +EG R + +++ L++A+ Sbjct: 229 FTDGAAHELRTPLTIIGTHLQVAK-LSTGTALEVSLNSAEEGVRRLNHTLEQMMALARAD 287 Query: 300 ASNSSAFPRAPVDLVAVAALVLEELA----GLALKKGIDLGLETTLESALVNGNEAQLGG 355 S D V +LV+EEL +++++ L ++ + A + L Sbjct: 288 ----SVTVEEECDSV---SLVIEELVERLPTVSMRR---LRIDFAEQDAGAKVPASLLHT 337 Query: 356 LLMNLIDNALRYTPQGGKVTVGLENKRSQVIITVTDNGPGIPAEVRERVFERFYR--NAA 413 + NL+DNA RY+ ++V +N + I+V D+GPG+ E V +RF+R + Sbjct: 338 AVRNLLDNAFRYSMGMVLLSVTFDNHKKLCRISVADSGPGLTEEQISVVSQRFWRGKTST 397 Query: 414 PDQPGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVATVCLPALPPQ 460 Q GSGLGL+IV IV G + L ++G GL+A + +PA + Sbjct: 398 HTQDGSGLGLSIVSAIVGRYGGDLILAGRSEG-GLIAELVIPAFTHE 443 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/314 (29%), Positives = 151/314 (48%), Gaps = 31/314 (9%) Query: 157 DDQW----HASLRRQMVLLLLAMSLVVLGMTMELRPILALKDELTTREPDSLTPLRAGGL 212 D++W H R+ + ++ L M + PI+ R S+ L AG L Sbjct: 131 DERWLVGQHPGRRKPPFSFFTTLVIIGLAMGIGAYPIVRRLTRRLERLQTSVEALGAGQL 190 Query: 213 --------QQELRPIVEAINQYIQRLNAQVTVQKRFVADAAHQLRTPLAVIDSQIQFARQ 264 + E+ + + N+ R+ A V QK +A+A+H+LR+PLA I ++ Sbjct: 191 STRIKVEGKDEVGRLATSFNRSAARIEALVDAQKALLANASHELRSPLARIRMAVELMAA 250 Query: 265 LEDPARVAQVLAALQEGSRSMTDLTNKLLLLSQAEASNSSAFPRAPVDLVAVAALVLEEL 324 P ++ L+ + L +++LL S+ +A+ + P+DL A LV EE Sbjct: 251 DAQP----EMRNELKRNIGELDQLIDEILLASRLDATADATQVFEPIDLTA---LVAEEC 303 Query: 325 AGLALKKGIDLGLETTLESALVNGNEAQLGGLLMNLIDNALRYTPQGGKVTVGLENKRSQ 384 A ID LET +S + G+ L ++ NL++NA RY G + V LE ++ Sbjct: 304 AR------IDAQLET--QSVEIPGDARLLRRMVRNLLENARRYG-NGTAIDVSLEKTGNK 354 Query: 385 VIITVTDNGPGIPAEVRERVFERFYR--NAAPDQPGSGLGLAIVREIVQASQGSIRLDAP 442 V++ V D GPG+P RE +F FYR A+ + G GLGL++V++I +A G + + Sbjct: 355 VVLQVCDGGPGVPVAERENIFAPFYRLPGASEREGGVGLGLSLVQQIARAHGGEV-VCTG 413 Query: 443 AQGSGLVATVCLPA 456 +G G V LPA Sbjct: 414 REGGGSCFKVTLPA 427 >gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 458 Score = 98.2 bits (243), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 164/363 (45%), Gaps = 40/363 (11%) Query: 91 DTLLAGRPDFPAEPDFAALYPVYTTTTFNGKPLRVVSYIRALFDE--GTLRMVAVSVGQT 148 D +L+ P+ E DF + R IRA G+ +V ++V + Sbjct: 99 DAILSREPNIETENDFDVRIDAH----------REFQAIRAELKASVGSPVIVVIAVDKA 148 Query: 149 MQGRQEMIDDQWHASLRRQMVLLLL--AMSLVVLGMTME------LRPILALKDELTTRE 200 I + + R ++L +L AM+ ++LG LR + A +T++ Sbjct: 149 -------IHTHFMSMFRTTLMLYILVAAMATIMLGWWAARQGLSPLRTMAARAQAVTSQN 201 Query: 201 PDSLTPLRAGGLQQELRPIVEAINQYIQRLNAQVTVQKRFVADAAHQLRTPLAVIDSQIQ 260 P+ A + E+ + +N + RL + F AD AH+LRTP++ + +Q Sbjct: 202 MKERMPVDA--VPTEMTDLAVKLNAMLDRLQNDIARLTEFSADLAHELRTPISNMLTQTH 259 Query: 261 FA-RQLEDPARVAQVLAALQEGSRSMTDLTNKLLLLSQAEASNSSAFPRA-PVDLVAVAA 318 Q A L++ E + + + +L L+Q E N A P +++ Sbjct: 260 VVLNQSRSAADYRDSLSSNAEELQRLGKTISDMLFLAQTE--NGLALPSVEKLNMAQECQ 317 Query: 319 LVLEELAGLALKKGIDLGLETTLESALVNGNEAQLGGLLMNLIDNALRYTPQGGKVTVGL 378 +LE LA +K + L E A+V G+ L NL+ NALRYTP G +++ + Sbjct: 318 ALLEFYEALAEEKEVTLRCEG---DAVVIGDRLMFRRALNNLLSNALRYTPSHGTISIKI 374 Query: 379 ENKRSQVIITVTDNGPGIPAEVRERVFERFYR----NAAPDQPGSGLGLAIVREIVQASQ 434 + ++ ++TV ++G IP E++ +F+RFYR + +GLGL+I R I+QA Sbjct: 375 KAAQAGTVVTVENDGKEIPIEIQPHLFDRFYRADKSRKKSESDSAGLGLSITRAIMQAHG 434 Query: 435 GSI 437 GS+ Sbjct: 435 GSV 437 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 916,015 Number of extensions: 35056 Number of successful extensions: 257 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 29 Length of query: 462 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 375 Effective length of database: 899,382 Effective search space: 337268250 Effective search space used: 337268250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)