BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3352.p (223 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981350|ref|YP_001354553.1| two-components system response ... 171 4e-44 gi|152981323|ref|YP_001354612.1| two components system response ... 165 3e-42 gi|152981318|ref|YP_001352484.1| response regulator of copper se... 149 1e-37 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 147 6e-37 gi|152981360|ref|YP_001351713.1| two-components system response ... 143 1e-35 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 171 bits (432), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 95/220 (43%), Positives = 139/220 (63%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFTVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++LL ED+ LA L + L++ + D +G AD VL +++D+++LDL LPK+ G Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQS 120 VL+RLR R++ +PV+ILTA SI+++V+ L GADD++ KPF + EL AR++ L RR + Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 TDKAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFS 180 I G L YD R + L L ARE +LEVL+ + G+ VSK L+ + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 LSEEPSADAIEIYISRLRKKLEHSSAAIMTLRGLGYLLKQ 220 SEE S +AIE+Y+ RLRKK+E I T+RGLGY L++ Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCLEK 220 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 165 bits (417), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 139/220 (63%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFTVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 M++L++ED+ LA L + L + ++VD +GE A + L ++ Y ++LLD+ LPK+ G Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQS 120 VLRRLRER + +PV+ILTA ++D++V L GADDY+ KPF++ E AR++ L+RR Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 121 TDKAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFS 180 D + G L +D + + L RE V EVL+ +QG+ V+K ++ +F Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180 Query: 181 LSEEPSADAIEIYISRLRKKLEHSSAAIMTLRGLGYLLKQ 220 ++ ++AIE+Y+ R RKKLE + I T+RG+GYLL++ Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLEPYNINIRTVRGMGYLLEK 220 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 149 bits (376), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 141/226 (62%), Gaps = 3/226 (1%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFTVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MK+L++ED + A ++ Q L+E F VD+A +G + +E YD+VLLD+MLP + G Sbjct: 1 MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQS 120 ++++ LR+ + VPV+ LTA GS+D++V+ L GAD YL+KPF EL+A ++ L+RR++ Sbjct: 61 HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120 Query: 121 TD-KAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVF 179 ++ ++ DLV D R+ G + L +E +LE+L ++G+ + ++ + ++ Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180 Query: 180 SLSEEPSADAIEIYISRLRKKLE--HSSAAIMTLRGLGYLLKQKDD 223 ++ + + + I++ I RLR K++ + I T+RG+GY L DD Sbjct: 181 DMNFDSNTNVIDVAIRRLRAKMDEPYEPKLIHTVRGMGYTLDIPDD 226 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 147 bits (371), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 136/222 (61%), Gaps = 3/222 (1%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFTVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MK+LL+ED + +L + L+E F VD A DG Q+ E+Y++V+LD+MLP L G Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQS 120 +LR LR+ + PV+ LTA ++++V+ L GADDYLVKPF EL+AR++ L+RR Sbjct: 61 QLLRELRKVRD-TPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGP 119 Query: 121 TDKAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFS 180 +++ I D+ D R+ G L L A+E +L +L ++G+ +S++ + V+ Sbjct: 120 VRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWD 179 Query: 181 LSEEPSADAIEIYISRLRKKLE--HSSAAIMTLRGLGYLLKQ 220 ++ + + +++ I RLR KL+ H I T+RG+GY+L++ Sbjct: 180 MNFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVLEE 221 >gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 143 bits (360), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 136/226 (60%), Gaps = 5/226 (2%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFTVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MK+LLIED + +L++ L E VD+A +G + +YD ++LD+MLP G Sbjct: 1 MKILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLPGRDGI 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQS 120 VL+ LR R PV++LTA G +D+++ L GADDYLVKPF EL+AR++ L RR Sbjct: 61 EVLQALR-RQKSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGR 119 Query: 121 TDKAAEIHCGDLVYDSNTRQFAVAGV-TLALPAREHDVLEVLMLKQGKTVSKTALMKGVF 179 ++ I DL D R+ A+ GV L L A+E +L L +G+ +SKT +++ V+ Sbjct: 120 PQESTHIRIADLHIDLIARR-AMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVW 178 Query: 180 SLSEEPSADAIEIYISRLRKKLEHSSAA--IMTLRGLGYLLKQKDD 223 ++ E + + +E+ I RLR KL+ S + T+RG+GYLL+++ + Sbjct: 179 DVNFESNTNVVEVAIKRLRAKLDEPSEVKLLHTIRGMGYLLEERSE 224 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 482,540 Number of extensions: 18850 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 32 Length of query: 223 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 143 Effective length of database: 925,261 Effective search space: 132312323 Effective search space used: 132312323 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)