BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3349.p (275 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 207 5e-55 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 182 2e-47 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 175 3e-45 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 162 3e-41 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 160 6e-41 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 207 bits (527), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 101/253 (39%), Positives = 159/253 (62%), Gaps = 1/253 (0%) Query: 20 PAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPT 79 PAI+++ VS + + G+ ALR+ ++++ +GEFV ++G +GCGKST L ++ G + Sbjct: 12 PAIDIKGVS-KVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTS 70 Query: 80 LGEVRVMGQVVDGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLFRGQPKAQAHALADEWIR 139 G + G +DG P G VFQ+ +FPW +V++N+ G R PKA+ L+ + Sbjct: 71 SGSANMYGMPIDGPSPERGMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTD 130 Query: 140 RVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRL 199 VGL KF ++YP QLSGGM++RVA+A+ N E+LLMDEPF ALD TR +Q +LL + Sbjct: 131 MVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEI 190 Query: 200 WSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVMEEVRYEQRFID 259 W +VVFVTH +EEA+ L+D+V V+TA P ++ +DL RPR + V + + D Sbjct: 191 WERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDLARPRDITAVEFNEIRRD 250 Query: 260 LSRRIWADLREEV 272 +++ + + + +V Sbjct: 251 ITQYLTSHVSAKV 263 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 182 bits (462), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 143/229 (62%), Gaps = 1/229 (0%) Query: 36 GRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLGEVRVMGQVVDGIDP 95 G + ++D S+++ GEFVA+VG +G GKST L GL+ P+ G+V++ + G Sbjct: 16 GASAPVIQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQLKLPQLPGRRR 75 Query: 96 RIGFVFQNDAVFPWRSVRDNVAAGPLFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLS 155 R VFQ+ + PWR+V DNVA G G + + + ++ GL +FG+ +PHQLS Sbjct: 76 R-AVVFQDGRLLPWRTVADNVAYGLETLGISADEQQSRIKQALQLTGLAEFGERWPHQLS 134 Query: 156 GGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWSAHSGSVVFVTHDLE 215 GG +RV +A+ P++LLMDEPFSA+D TR +Q EL+R+W A +V+FVTHD++ Sbjct: 135 GGQVQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQSAVMFVTHDID 194 Query: 216 EAIALADKVYVLTARPATLKSVYPIDLPRPRVMEEVRYEQRFIDLSRRI 264 EA+ LAD+V VL PAT+ IDLPRPRV +V + + LS ++ Sbjct: 195 EAVFLADRVIVLGGSPATVVENLRIDLPRPRVRSDVAFAEYVAHLSTQL 243 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 175 bits (443), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 3/228 (1%) Query: 22 IELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLG 81 IEL+ V F TADG + L ++ GE VA++G +G GKST L ++ GL+ G Sbjct: 7 IELKGVDKSFQTADGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPADSG 66 Query: 82 EVRVMGQVVDGIDPRIGFVFQNDAVFPWRSVRDNVAAGPLFRGQPKAQAHALADEWIRRV 141 G+ + G I VFQ+ A+FPW +V+ NV G +G P A+ AD + + Sbjct: 67 SAMYRGKNIYGPVAGIAMVFQSFALFPWLTVQQNVELGLEAQGVPPAEREKRADAMLDLI 126 Query: 142 GLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLWS 201 GL FG P +LSGGM++RV +A+ + P++LLMDE FSALD+ T ++D++L +W Sbjct: 127 GLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWE 186 Query: 202 AH---SGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPR 246 + + ++ V+H++EEA+ ++D++ VL++ P ++S IDLPRPR Sbjct: 187 ENRIPTKGILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEIKIDLPRPR 234 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 162 bits (409), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 139/229 (60%), Gaps = 5/229 (2%) Query: 22 IELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLG 81 I++++ F T G AL + +++V++GEF+ ++G +GCGKST L+LI GL + T G Sbjct: 9 IDIQHAEMSFSTKKGIFN-ALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGG 67 Query: 82 EVRVMGQVVDGIDPRIGFVFQNDAVFPWRSVRDNV--AAGPLFRG-QPKAQAHALADEWI 138 + + + G P VFQN ++ PW + +NV A +F + KA+ A + Sbjct: 68 MLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERVFSATESKAELKARTRAAL 127 Query: 139 RRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLR 198 VGL P+++SGGM++RV +A+ P++LLMDEPF ALD TR +QDELL+ Sbjct: 128 ALVGLSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLK 187 Query: 199 LWSAHSGSVVFVTHDLEEAIALADKVYVLTARP-ATLKSVYPIDLPRPR 246 + +A +VV VTHD++EA+ L+D++ +LT P AT+ + + L RPR Sbjct: 188 IVAATGSTVVMVTHDVDEAVLLSDRIVMLTNGPSATIGEILEVKLARPR 236 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 160 bits (406), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 18 ATPAIELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLK 77 + P +++ +VS + T + R A S V + + ++GP+GCGKST L + G + Sbjct: 36 SAPLLQVDDVSLEYRTRE-RVVRATHRVSFDVHQADRFVLLGPSGCGKSTLLKAVAGFIL 94 Query: 78 PTLGEVRVMGQVVDGIDPRIGFVFQN-DAVFPWRSVRDNVAAGPLF--RGQPKAQAHALA 134 P GE+R+ G+ V P VFQ D + PW++V+ NV PL R + +A A Sbjct: 95 PVEGEIRLDGKAVTAPGPDRIVVFQEFDQLSPWKTVKQNVIF-PLLASRTLGRKEAEERA 153 Query: 135 DEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQD 194 ++ +VGL KF D +PHQLSGGM++RVA+A+ P +LLMDEPF+ALD TR MQ+ Sbjct: 154 LHYLAKVGLSKFSDVHPHQLSGGMKQRVAIARALAMQPRVLLMDEPFAALDALTRRKMQE 213 Query: 195 ELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKS 236 ELL+LW +++FVTH +EEA+ + +++ +L+ P +++ Sbjct: 214 ELLQLWDEVHFTLLFVTHSIEEALVVGNRIALLSPHPGRMRA 255 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 648,721 Number of extensions: 26559 Number of successful extensions: 274 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 66 Length of query: 275 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 193 Effective length of database: 917,867 Effective search space: 177148331 Effective search space used: 177148331 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)