BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3347.p
         (228 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979871|ref|YP_001355310.1| PiuC iron-regulated protein [Ja...   239   9e-65
gi|152980388|ref|YP_001355308.1| PiuC iron-regulated protein [Ja...   236   1e-63

>gi|152979871|ref|YP_001355310.1| PiuC iron-regulated protein
           [Janthinobacterium sp. Marseille]
          Length = 226

 Score =  239 bits (611), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 118/226 (52%), Positives = 151/226 (66%), Gaps = 2/226 (0%)

Query: 1   MLITIPQLLDPQALQAVRKLLNEAGEAWVDGRVTAGYQGAPVKFNQQIDERSELAQRCQH 60
           M++ IP++L P  +  +R+ L+ A   WVDG+ T G QGA VK N+Q+ E S +      
Sbjct: 1   MMLHIPEVLTPAQVSEIRQRLDAAD--WVDGKATVGAQGAQVKKNRQLPELSPVGMELGQ 58

Query: 61  IIVSTLERHPRFISAALPNLIYPPMFNRYGQGMNFGAHVDGSVRIHPHNGRKLRTDVSAT 120
           II+  L  +P F +AALP    PP+FNRY  G ++G H+DGSVR  P +   LRTD+S T
Sbjct: 59  IILKALVNNPLFFAAALPMRYMPPLFNRYEGGEHYGFHIDGSVRNIPGSNLSLRTDLSCT 118

Query: 121 LFLADPADYDGGELQIEDTYGMHSVKLAAGDMVLYPATSLHTVTPVTRGVRMGCFFWVQS 180
           LFL +P DYDGGEL + DTYG H VKL AGDM+LYP++SLH V PVTRG R+  FFW+QS
Sbjct: 119 LFLCEPEDYDGGELIVADTYGEHEVKLPAGDMILYPSSSLHKVEPVTRGARVCSFFWLQS 178

Query: 181 LVRDDAQRQLLFEMDNAIQRLNQTEADALARRTLVGCYHNLLRQWS 226
           +V DDA+R LLFE+D  IQ+L     D      L G YHNLLRQW+
Sbjct: 179 MVADDAKRSLLFELDQNIQKLRAKLGDCEEVVGLTGHYHNLLRQWA 224


>gi|152980388|ref|YP_001355308.1| PiuC iron-regulated protein
           [Janthinobacterium sp. Marseille]
          Length = 226

 Score =  236 bits (601), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/226 (51%), Positives = 150/226 (66%), Gaps = 2/226 (0%)

Query: 1   MLITIPQLLDPQALQAVRKLLNEAGEAWVDGRVTAGYQGAPVKFNQQIDERSELAQRCQH 60
           M++ IP++L    +  +RK ++ A   WVDG+ T G QGA VK N+Q+ E S    +   
Sbjct: 1   MMLHIPEVLTAAQVVEIRKTIDTA--EWVDGKATVGAQGAKVKRNRQLPELSATGLKVGQ 58

Query: 61  IIVSTLERHPRFISAALPNLIYPPMFNRYGQGMNFGAHVDGSVRIHPHNGRKLRTDVSAT 120
            I+  L  HP F+SAALP    PP+FNRY  G ++G HVDGSVR  P +   LRTD+S T
Sbjct: 59  EILKALAGHPLFVSAALPMRYMPPLFNRYEGGEHYGFHVDGSVRSIPGSNLSLRTDLSCT 118

Query: 121 LFLADPADYDGGELQIEDTYGMHSVKLAAGDMVLYPATSLHTVTPVTRGVRMGCFFWVQS 180
           LFL++P +Y+GGEL + DTYG H+VKL AGDM+LYPA+S+H V PVT G R+  FFWVQS
Sbjct: 119 LFLSEPEEYEGGELVVADTYGEHAVKLPAGDMILYPASSVHKVEPVTHGARISSFFWVQS 178

Query: 181 LVRDDAQRQLLFEMDNAIQRLNQTEADALARRTLVGCYHNLLRQWS 226
           +V DD +R LLFE+D  IQ+L     D      L G YHNLLRQW+
Sbjct: 179 MVADDGKRGLLFELDQNIQKLRARLGDCEEIIGLTGHYHNLLRQWA 224


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 545,122
Number of extensions: 21346
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 148
Effective length of database: 925,261
Effective search space: 136938628
Effective search space used: 136938628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)