BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3345.p (220 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981323|ref|YP_001354612.1| two components system response ... 201 4e-53 gi|152981350|ref|YP_001354553.1| two-components system response ... 197 5e-52 gi|152983086|ref|YP_001353412.1| response regulator of copper se... 157 4e-40 gi|152981360|ref|YP_001351713.1| two-components system response ... 152 1e-38 gi|152981423|ref|YP_001354086.1| two-components system response ... 150 5e-38 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 201 bits (510), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 108/221 (48%), Positives = 143/221 (64%), Gaps = 3/221 (1%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFN--AAVLVLDIGLPGIDGF 58 M +L+VEDD VL L+R L G++V V+NG DA N A+L+LDI LP +DG Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 59 EVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 VLRR+R + PVL+LTARDT+ DRV GL+LGADDY+ KPF PE AR++ALIRR Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 119 PQPAQ-LSVGGLSLDNATKRAEIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 177 + L+ GGL D R + + +ELS+RE V E L+ +VV+K+Q+ID + Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180 Query: 178 WGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEKS 218 WG+D NA+EVYV R R K+ + IRT+RG GY+LEKS Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLEPYNINIRTVRGMGYLLEKS 221 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 197 bits (501), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 146/222 (65%), Gaps = 7/222 (3%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALS----QRFNAAVLVLDIGLPGID 56 M +LL EDD VL DGL+R L G+ V NG +A S Q F+ +L+LD+GLP + Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFD--LLILDLGLPKMS 58 Query: 57 GFEVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 116 G EVL+R+RA + PVL+LTA D+I RV GL+LGADD++ KPFA EL AR++AL RR Sbjct: 59 GLEVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRR 118 Query: 117 SA-PQPAQLSVGGLSLDNATKRAEIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAV 175 A P + G LS D + A I+ + ++LS RE +LE L+Q + R+VSK+Q++D + Sbjct: 119 GAGGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHL 178 Query: 176 LPWGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEK 217 W E+ + NA+EVYV R+R KI G+ I T+RG GY LEK Sbjct: 179 CEWSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCLEK 220 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 157 bits (398), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 139/224 (62%), Gaps = 10/224 (4%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA--LSQRFNAAVLVLDIGLPGIDGF 58 M +L+VED+ + L + L GF V NNG D L+ + +++LD+ LP IDG+ Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGW 60 Query: 59 EVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 ++L +R+AGN+ P L LTARD + DRV GLELGADDY+VKPFA EL+AR++ L+RR Sbjct: 61 KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGN 120 Query: 119 PQPA--QLSVGGLSLDNATKRAEIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVL 176 P P +L V L LD A + A G+++ L+ +E+ +LE+L++H V+ + I + Sbjct: 121 PSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQI- 179 Query: 177 PWGEDFT--INAVEVYVSRIRLKIAD--SGVVIRTIRGFGYMLE 216 W +F N ++V + R+R K+ D +I TIRG GY+LE Sbjct: 180 -WDINFNSDTNVIDVAIRRLRAKMDDDYDPKLISTIRGVGYVLE 222 >gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 152 bits (384), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 139/226 (61%), Gaps = 14/226 (6%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGND----ALSQRFNAAVLVLDIGLPGID 56 M +LL+ED+ L R L G V NNG D AL+ ++A +VLDI LPG D Sbjct: 1 MKILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDA--IVLDIMLPGRD 58 Query: 57 GFEVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 116 G EVL+ +R +TPV++LTAR + DR+HGL+ GADDYLVKPF+ EL+AR++AL RR Sbjct: 59 GIEVLQALRRQ-KSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRR 117 Query: 117 SAPQPA-QLSVGGLSLDNATKRAEIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAV 175 PQ + + + L +D +RA R+++L+ +E+ +L L +H +V+SK I++ V Sbjct: 118 GRPQESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMV 177 Query: 176 LPWGEDF--TINAVEVYVSRIRLKIADSGVV--IRTIRGFGYMLEK 217 W +F N VEV + R+R K+ + V + TIRG GY+LE+ Sbjct: 178 --WDVNFESNTNVVEVAIKRLRAKLDEPSEVKLLHTIRGMGYLLEE 221 >gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 221 Score = 150 bits (379), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 123/223 (55%), Gaps = 9/223 (4%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALS----QRFNAAVLVLDIGLPGID 56 M LLVEDDP + + + L GF V +GNDA + F+ A+L D+GLP +D Sbjct: 1 MRALLVEDDPDVGQHVLQALQEAGFVVDWSRDGNDAWFKGDVEEFDVAIL--DLGLPQLD 58 Query: 57 GFEVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 116 G VLRR RAA PVL+L+AR ++V G+E GADDYL KPF EL+AR +AL+RR Sbjct: 59 GLSVLRRWRAAKRTFPVLILSARSDWSEKVEGIESGADDYLAKPFEVAELIARTRALVRR 118 Query: 117 SAPQPAQ-LSVGGLSLDNATKRAEIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAV 175 +A L G L+LD A +D + + LS E+ YL A R VS ++ + + Sbjct: 119 AAGHADPVLICGALTLDTRRMTATVDKQPVRLSPLEFRFFSYLAHQAGRPVSAGELAEHL 178 Query: 176 LPWGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEKS 218 E NA+E V R+R K +I T RGFGYML S Sbjct: 179 YGDSEGVDTNAIEALVLRMRRKFGAD--LIETRRGFGYMLSGS 219 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 517,865 Number of extensions: 21300 Number of successful extensions: 187 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 35 Length of query: 220 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 140 Effective length of database: 925,261 Effective search space: 129536540 Effective search space used: 129536540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)