BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3344.p (472 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 245 4e-66 gi|152982775|ref|YP_001354611.1| two-components system response ... 222 5e-59 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 135 4e-33 gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 130 2e-31 gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing... 127 2e-30 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 245 bits (626), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 168/470 (35%), Positives = 259/470 (55%), Gaps = 30/470 (6%) Query: 27 DLLKWLIAPLLLLNLVGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTSAELT 86 ++L W++ PLLLL + +TY +A A FD+ L D + QV+ + LT Sbjct: 68 EILDWMLVPLLLLWPLSIAITYLVAKSIANEPFDRALEDKVTVVAQQVKEVNGKVVTRLT 127 Query: 87 QQAEQILRSNHSDTTFFAVRNTQGEILVGDKGFPQLPESETYDRP----FNYDGEMRGEP 142 A IL ++ D ++ VRN+ G+++ GD P LP+ P F YD +R Sbjct: 128 GAATDILHADDIDNVYYQVRNSFGDVVEGDMEIP-LPKDVEAPPPWSTQFRYDF-IRNTE 185 Query: 143 VRISAI-----------QVRVKNGVISVAVAETIRKRDRAHYTILLSFLLLDGALTFGSL 191 VRI+ I Q+ ++ + V VAET+ KR + I+ ++ + + +L Sbjct: 186 VRIAYIYVDLHKTQTAPQLSIEPRLALVQVAETLDKRSQLVNQIIKGVIVPEFIILPIAL 245 Query: 192 SVVMIAVRRGLRPLKSLQRNLEQRDHGKLGAIDGIGAPVELQPLIVAMNELMARINKGEQ 251 +V A+ RGLRPL LQ+ + +R L ID P E+ PL+ ++NE++ R+++ + Sbjct: 246 VLVWFALTRGLRPLVELQQRIRERRPDDLSPIDSGYVPEEILPLVGSLNEMLERLSQSIK 305 Query: 252 AQQNFMADVAHQLRTPLTGLKLQLELLHDKHHDQPDTARSLAMMNSSVERMIRQSRQLLA 311 Q+ F+AD AHQ++TPL G+++Q EL + DQ + +SL + S + R QLLA Sbjct: 306 VQKRFIADAAHQMKTPLAGMRMQSELAL-RQTDQVEIHKSLEQLAKSSKSATRMINQLLA 364 Query: 312 LARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKQIDLGFDLQP---ARLRGDRFLL 368 LAR+E +R L+ L L +L ++VQ +++ + K+IDLGF+ QP + GD +L Sbjct: 365 LARAENQTPTTRPLQPLELSELARDTVQEWVQTSFNKKIDLGFE-QPDYHIMVNGDAIML 423 Query: 369 SDLIDNLIDNAVRYSPQQG--TVTVRCLEQDGATVLSVEDSGPGIAPEHRELIFDRYYRA 426 +L++NLIDNA+ Y+P G TV VR E+ L VED+GPGIAP + IF+R+YR Sbjct: 424 RELLNNLIDNALNYTPAGGHATVRVRADEEARLAYLEVEDTGPGIAPHEHKRIFERFYRI 483 Query: 427 -NDKIAGSGLGLAIVREIAHDHGGVISV----DC-KEQGQGTIFTVRFPL 470 + GSGLGLAIVREIA HG I + +C + G + + PL Sbjct: 484 LGSNVEGSGLGLAIVREIAQQHGAEIDILNNPNCTNPKAPGCLMRITLPL 533 >gi|152982775|ref|YP_001354611.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 470 Score = 222 bits (565), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 149/441 (33%), Positives = 234/441 (53%), Gaps = 12/441 (2%) Query: 36 LLLLNLVGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTSAELTQQAEQILRS 95 +LL+++VG +Y++ A +D L + + V + + +L+ AE+ L Sbjct: 29 ILLIDIVG---SYFVVRHIANDVYDVELNEIAREMLLHVTRKDGQLGFDLSPDAERTLLL 85 Query: 96 NHSDTTFFAVRNTQGEILVGDKGFPQLPESETYDRPFNYDGEMRGEPVRISAIQ----VR 151 + D ++A+ T G+++ GD P ++ YDG ++G+ VRI+ ++ + Sbjct: 86 DKEDQVYYAIHTTDGKLIAGDPNLPAHQTIKSGRETAYYDGILQGQDVRIALLRGKPLLE 145 Query: 152 VKNGVISVAVAETIRKRDRAHYTILLSFLLLDGALTFGSLSVVMIAVRRGLRPLKSLQRN 211 + + +AET KRDR +L+ +L L + ++ V GL PL+ LQ+ Sbjct: 146 PPAEAVMIQIAETQVKRDRHERALLIQLILPQVLLILIAGILIWRGVAHGLSPLRKLQQE 205 Query: 212 LEQRDHGKLGAIDGIGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAHQLRTPLTGL 271 L R H L I P E++PL+ A+N+LM R++ Q F+AD AHQLRTP+ GL Sbjct: 206 LAMRSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDGVLGFQGRFIADTAHQLRTPVAGL 265 Query: 272 KLQLELLHDKHHDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEELSLD 331 K EL + D R+L + +S ER+ R QLL+LAR+EP + L+ Sbjct: 266 KAHAELAL-RETDPVQVKRALGHLYTSAERLSRLVSQLLSLARNEPNNV-AVNFAPFDLN 323 Query: 332 KLVEESVQHFIEEADKKQIDLGFDL--QPARLRGDRFLLSDLIDNLIDNAVRYSPQQGTV 389 +L + Q ++ A KKQIDLGF+ Q L G+ ++++I+NL+DNA+RY+P G V Sbjct: 324 QLALRTAQEWVPLAYKKQIDLGFETAEQTVLLNGEAARVTEMINNLVDNAIRYTPSGGRV 383 Query: 390 TVRCLEQDGATVLSVEDSGPGIAPEHRELIFDRYYR-ANDKIAGSGLGLAIVREIAHDHG 448 TVR + + L V D G I + R+ IF+R++R + GSGLGLAIV EIA H Sbjct: 384 TVRVHKDEEGAHLVVSDDGTRIPIDERQRIFERFHRLLGNHEEGSGLGLAIVHEIATLHN 443 Query: 449 GVISVDCKEQGQGTIFTVRFP 469 I+++ G G FTV FP Sbjct: 444 ARITLEDDIDGVGNTFTVTFP 464 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 164/330 (49%), Gaps = 11/330 (3%) Query: 140 GEPVRISAIQVRVKN--GVISVAVAETIRKRDRAHYTILLSFLLLDGALTFGSLSVVM-- 195 G R +A++VR +N G I VA + + + +L L +++++ Sbjct: 140 GRSYRGAALEVRPENTPGGIPFIVAIAMDIDFHLDFLTMFKTILWWATLIVSVIALIVAW 199 Query: 196 IAVRRGLRPLKSLQRNLEQRDHGKLGA-IDGIGAPVELQPLIVAMNELMARINKGEQAQQ 254 AV+ G RP++ + R++ +L +D P+EL L + N+++ RI G Sbjct: 200 CAVQWGHRPIRKVSRDIRAIRSSRLDVRLDPTEVPIELAELAASFNDMLGRIEDGFAKLA 259 Query: 255 NFMADVAHQLRTPLTGLKLQLELLHDKHHDQPDTARSLAMMNSSVERMIRQSRQLLALAR 314 NF AD+AH+LRTP+T L +Q E+ + + L ERM R +L LA+ Sbjct: 260 NFSADIAHELRTPVTNLVMQTEVALSQSRSSAEYREILYSNLEEFERMSRMISDMLFLAQ 319 Query: 315 SEPGLFESRKLEELSLDKLVEESVQHFIEEADKKQIDLGFDLQPARLRGDRFLLSDLIDN 374 +E + L ++S+ ++++ +F A++ I L + A ++ DR ++ + N Sbjct: 320 TENDP-HNLHLSDISIAAMIQDLFDYFEALAEEANITLTLEGNAAPVKADREMMLRALSN 378 Query: 375 LIDNAVRYSPQQGTVTVRCLEQDGATVLSVEDSGPGIAPEHRELIFDRYYRAND----KI 430 LI NA++YS TV V + T +SVE+ IA E +FDR++R + K Sbjct: 379 LISNAIQYSAPGSTVIVHLSQDKQVTTVSVENPAGQIAREDLPKLFDRFFRTDPSRKRKA 438 Query: 431 AGSGLGLAIVREIAHDHGGVISVDCKEQGQ 460 +G+GLGLAIV+ IA HGG + EQ Q Sbjct: 439 SGAGLGLAIVKSIAEAHGGTVQA-TSEQAQ 467 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 210/463 (45%), Gaps = 35/463 (7%) Query: 29 LKWLIAPLLLLNLVGAGLTYWLAWLPAQHAF--DQNLMDSTWGLYAQVRHRQERTS--AE 84 L + + +L+ + VG TY L Q F DQ LM G + +RH E + A Sbjct: 15 LLFFLVSVLIFSGVG---TYLYRSLAGQLEFRDDQELM----GKISLMRHLAEESDSIAA 67 Query: 85 LTQQAEQILRSNHS-DTTFFAVRNTQGEILV---GDKG----FPQLP-ESETYDRPFNYD 135 + + L + S D +++ G I++ D+G LP E R Sbjct: 68 IRKDPHYFLDAAASHDRLIIMLKDVDGNIILHTNSDQGSLPTIAVLPLEMNPVPRSITLL 127 Query: 136 GEMRGEPVRISAIQVRVKNG---VISVAVAETIRKRDRAHYTILLSFLLLDGALTFGSLS 192 G R A Q +V++G VI VA + R Y + + L G L L Sbjct: 128 WTSTGLTARAIAAQGKVRSGEKIVIVVARTASDRMELLKAYRVEIGMAALCGTLLAALLG 187 Query: 193 VVMIAVRRGLRPLKSLQRNLEQRDHGKLGA-IDGIGAPVELQPLIVAMNELMARINKGEQ 251 ++ VRRGLRP++ + +L +D AP EL L+ A N ++ R++ Q Sbjct: 188 YIL--VRRGLRPVRLIAGQASSITAHRLDTRLDLSSAPQELHELVQAFNAMLDRLDGSFQ 245 Query: 252 AQQNFMADVAHQLRTPLTGLKLQLELLHDKHHDQPDTARSLAMMNSSVERMIRQSRQLLA 311 F AD+AH LRTPL L +Q ++ + D L ER+ R +L Sbjct: 246 RLSQFSADLAHDLRTPLNNLMVQTQVALVQARSVEDYQGLLISNVEEYERLTRMVESMLF 305 Query: 312 LARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKQIDLGFDLQPARLRGDRFLLSDL 371 LAR E K LSL + ++ +F AD+ + L + R+ D LL Sbjct: 306 LARVEHTHVMLNK-SALSLPEELQRIADYFEGLADEAGVRLTVE-AGGRVYADAILLRRA 363 Query: 372 IDNLIDNAVRYSPQQGTVTVR-CLEQDGATVLSVEDSGPGIAPEHRELIFDRYYRAN--- 427 I NL+ NA+ Y+P+ T+ ++ + DGATV SV + G GIA +H +F+R+YR + Sbjct: 364 IGNLVANAIPYTPRGATIVLKGVMTADGATV-SVVNPGAGIAAQHIPHVFNRFYRGDAAR 422 Query: 428 -DKIAGSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVRFP 469 + +GLGLAIV+ I HGG +V +E G T F++ FP Sbjct: 423 SNSATSTGLGLAIVQSIMALHGGRATVTSEENGL-TEFSLIFP 464 >gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 458 Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 178/345 (51%), Gaps = 39/345 (11%) Query: 147 AIQVRVKNGVIS-VAVAETIRKRDRAHY-----TILLSFLLLDGALTFGSLSVVMI---A 197 AI+ +K V S V V + K H+ T L+ ++L+ +++ +M+ A Sbjct: 126 AIRAELKASVGSPVIVVIAVDKAIHTHFMSMFRTTLMLYILV------AAMATIMLGWWA 179 Query: 198 VRRGLRPLKSL--------QRNLEQRDHGKLGAIDGIGAPVELQPLIVAMNELMARINKG 249 R+GL PL+++ +N+++R +D + P E+ L V +N ++ R+ Sbjct: 180 ARQGLSPLRTMAARAQAVTSQNMKER-----MPVDAV--PTEMTDLAVKLNAMLDRLQND 232 Query: 250 EQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHHDQPDTARSLAMMNSSVERMIRQSRQL 309 F AD+AH+LRTP++ + Q ++ ++ D SL+ ++R+ + + Sbjct: 233 IARLTEFSADLAHELRTPISNMLTQTHVVLNQSRSAADYRDSLSSNAEELQRLGKTISDM 292 Query: 310 LALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKQIDLGFDLQPARLRGDRFLLS 369 L LA++E GL +E+L++ + + ++ + A++K++ L + A + GDR + Sbjct: 293 LFLAQTENGL-ALPSVEKLNMAQECQALLEFYEALAEEKEVTLRCE-GDAVVIGDRLMFR 350 Query: 370 DLIDNLIDNAVRYSPQQGTVTVRCLEQDGATVLSVEDSGPGIAPEHRELIFDRYYRANDK 429 ++NL+ NA+RY+P GT++++ TV++VE+ G I E + +FDR+YRA+ Sbjct: 351 RALNNLLSNALRYTPSHGTISIKIKAAQAGTVVTVENDGKEIPIEIQPHLFDRFYRADKS 410 Query: 430 IAGS-----GLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVRFP 469 S GLGL+I R I HGG +SV E T F++ FP Sbjct: 411 RKKSESDSAGLGLSITRAIMQAHGGSVSVVSGE--SKTAFSLYFP 453 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 944,606 Number of extensions: 37352 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 30 Length of query: 472 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 385 Effective length of database: 899,382 Effective search space: 346262070 Effective search space used: 346262070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)