BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3342.p (1177 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/re... 171 3e-43 gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons... 145 1e-35 gi|152982741|ref|YP_001352306.1| hybrid two-components system re... 139 1e-33 gi|152982481|ref|YP_001353348.1| signal transduction histidine k... 112 1e-25 gi|152982497|ref|YP_001353355.1| two-component hybrid sensor and... 110 5e-25 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 130/420 (30%), Positives = 200/420 (47%), Gaps = 54/420 (12%) Query: 486 ELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDL 545 E E AN+ KSEFLA MSHE+RTP+N L + +L E + AQ + A L Sbjct: 324 EAESANRAKSEFLAVMSHEIRTPMNGMLGMMQLALAETSDRTQREHLETAQYSAEA---L 380 Query: 546 LALINDILDLSKMEAGKLDIVSESFVVSKLAEELKASFVVMAQQKSLGFKVEVEPGVPLR 605 L+++NDILD SK+E+G L + F + K + + + SL VE +P Sbjct: 381 LSILNDILDFSKLESGNLQFEAAQFDLLKTMDSVINLMASRSCDASLALAVECPAEIPRM 440 Query: 606 METDMQRLGQILKNLLSNAIKFTEKGEVSLRI---SLDAG-GRIVFAVRDTGIGIGAEQH 661 + D RL Q+L NL++NA+KFTE+G V+L++ +L+AG R+ F+V D+GIGI E Sbjct: 441 LVGDANRLRQVLLNLINNALKFTEQGGVTLKVALLNLNAGQARMRFSVIDSGIGIAPEAQ 500 Query: 662 QFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIEVQSRLGEGSIFTLSLPQVYR 721 +F+AF QAD S R++GGTGLGLSI + + + GG I V S G+GS F L Sbjct: 501 ARLFQAFSQADNSISRRFGGTGLGLSICKKIVDMQGGSIGVHSAEGKGSEFWFEL----- 555 Query: 722 PEQAVMRTALPVPAAAAATLQAAQVATAPDVRIPGPQVMPTPQKRLQDIAIDDDRDRIEA 781 Q +V + P+V+ P K + + Sbjct: 556 -----------------------QFGVGGEVEVT-PEVLAAPAKSTRQLR---------- 581 Query: 782 ASRLILVIEDDAAFAMILRDLAHEMGFQCVVTLSANEGVAAAEMYRPSAILMDMNLPDFS 841 IL+ ED+ + L + G + + E V A + +LMDM++P+ Sbjct: 582 ----ILLAEDNEINQKVAATLLKKAGHTVEIAQNGLEAVQAVQNSVFDVVLMDMHMPEMD 637 Query: 842 GLGVLDQIKR-NPRTRHIPVHVVSVADY---SQEALERGAIGYALKPVQREELVGAIRKL 897 GL I+ + +P+ ++ A Q ++ G + +KP + E L + +L Sbjct: 638 GLAATRAIRNMSGPAATLPIVALTAAGALSDIQICMDAGMNYFLVKPFRMERLSSILHEL 697 Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 7/121 (5%) Query: 1053 RILVVEDDVRNIFALSSVLEPKGMKVDIARNGREALQALQRSQEQPGAPIDLVLMDIMMP 1112 RIL+ ED+ N +++L+ G V+IA+NG EA+QA+Q S D+VLMD+ MP Sbjct: 581 RILLAEDNEINQKVAATLLKKAGHTVEIAQNGLEAVQAVQNS------VFDVVLMDMHMP 634 Query: 1113 EMDGLTAMREIRKQA-IWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1171 EMDGL A R IR + LPI+ALTA D + C+ AG N ++ KP +E+L S++ Sbjct: 635 EMDGLAATRAIRNMSGPAATLPIVALTAAGALSDIQICMDAGMNYFLVKPFRMERLSSIL 694 Query: 1172 R 1172 Sbjct: 695 H 695 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 152/539 (28%), Positives = 245/539 (45%), Gaps = 72/539 (13%) Query: 459 LEEQTQLLELQKEDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKL 518 L Q +LL + + +T L E ANQ K+ ++A +SHELR+PLNS L +++ Sbjct: 612 LNRQNELLTQEIDAHQRTDAALQSAKEAAESANQAKTRYVAGISHELRSPLNSILGYSQI 671 Query: 519 LADNKQGNLSDEQVRFA-QTISSAGNDLLALINDILDLSKMEAGKLDIVSESFVVSKLAE 577 L N+Q D R A QTI +G LL L++++LDL+++EA ++ + + + + Sbjct: 672 LLKNEQ---LDAAPRTAIQTIQRSGEHLLGLVDELLDLARIEADRMRLEPAPILFAAFID 728 Query: 578 ELKASFVVMAQQKSLGFKVEVEPG--VPLRMETDMQRLGQILKNLLSNAIKFTEKGEVSL 635 +L + +V Q ++ G +++ G +P + D +RL QIL NLL+NA++FT+ G V+L Sbjct: 729 DLLS--MVRPQAEAKGLRLQYTHGGDLPHYVLADGKRLRQILINLLTNALRFTDTGSVTL 786 Query: 636 RISLDAGGRIVFAVRDTGIGIGAEQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHL 695 + G + F V DTGIGI + Q IF+ F + R G GLGL+I+ L + Sbjct: 787 HVEC-TGVSMRFDVIDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILM 845 Query: 696 LGGDIEVQSRLGEGSIFTLSLPQVYRPEQAVMRTALPVPAAAAATLQAAQVATAPDVRIP 755 + G + + S G+GS F + LP + I Sbjct: 846 MNGSLNLISTQGQGSTFVVRLPL---------------------------------MEIN 872 Query: 756 GPQVMPTPQKRLQDIAIDDDRDRI--EAASRLILVIEDDAAFAMILRDLAHEMGFQCVVT 813 + +P RD I +R +LV++D +L + +GF Sbjct: 873 AFEALP-------------QRDVIGHTGVARTLLVVDDQPVQRHMLSGMLIPLGFNVREA 919 Query: 814 LSANEGVAAAEMYRPSAILMDMNLPDFSGLGVLDQIKRNPRTRHIPVHVVSVADYSQEAL 873 S +E + + + P AIL+D+ + G + +R + IP+ VS + + + Sbjct: 920 ASGHECIDLLQDFVPDAILLDIGMDGMDG---WETARRVRASSGIPIIFVSADLFENDPV 976 Query: 874 ERGAIG---YALKPVQREELVGAIRK---LEAKFLQGLRHVLVVEDDARQLD----SIRQ 923 + A G + KPV EL+ A+++ LE + V V E +L+ SI Q Sbjct: 977 KLKAAGCQDFVGKPVLESELMLALQRQLGLEWIYASTPPPVPVTEALPERLEFRQPSIEQ 1036 Query: 924 LLAGENINLV-GVRTAADALARLRETTF-DCMVMDLNLPDLSGYQLLEKMAEQEHVAFP 980 LL + V G+R A D LA T C V+ L L + E E VA P Sbjct: 1037 LLQLTRMGHVSGLRRAVDRLAAADATVVASCNVVRSLLDRFELGALENALMENERVASP 1095 Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 10/122 (8%) Query: 1052 RRILVVEDDVRNIFALSSVLEPKGMKVDIARNGREALQALQRSQEQPGAPIDLVLMDIMM 1111 R +LVV+D LS +L P G V A +G E + LQ D +L+DI M Sbjct: 890 RTLLVVDDQPVQRHMLSGMLIPLGFNVREAASGHECIDLLQDFVP------DAILLDIGM 943 Query: 1112 PEMDGLTAMREIRKQAIWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKP-LDVEKLLSL 1170 MDG R +R + +PII ++A ++D K AAG D++ KP L+ E +L+L Sbjct: 944 DGMDGWETARRVRASS---GIPIIFVSADLFENDPVKLKAAGCQDFVGKPVLESELMLAL 1000 Query: 1171 VR 1172 R Sbjct: 1001 QR 1002 >gi|152982741|ref|YP_001352306.1| hybrid two-components system response regulator and sensor kinase [Janthinobacterium sp. Marseille] Length = 948 Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 137/241 (56%), Gaps = 8/241 (3%) Query: 480 LVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTIS 539 L++ + AN K+ FL MSHELRTPL+ L +L + ++D+Q + + Sbjct: 460 LLKAKLHADDANTAKTLFLTTMSHELRTPLHGLLGALELFSLTA---VTDQQRMYLHAMQ 516 Query: 540 SAGNDLLALINDILDLSKMEAGKLDIVSESFVVSKLAEELKASFVVMAQQKSLGFKVEVE 599 + + LL ++ LD++++EAG ++ + +F L EE+ A++ A++K+L + Sbjct: 517 QSSSILLKTVSQTLDIARIEAGAFELETTAFSSLALLEEVIAAYAAPAERKALCICGVPD 576 Query: 600 PGVPLRMETDMQRLGQILKNLLSNAIKFTEKGEVSLR---ISLDAG-GRIVFAVRDTGIG 655 P +P + D+ R+ QIL NL+SNAIKFT+ G+V LR ++L+ G IV V D+G G Sbjct: 577 PAIPELLVGDVTRIKQILNNLMSNAIKFTDSGQVVLRSRLLNLEHGMATIVLQVEDSGRG 636 Query: 656 IGAEQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIEVQSRLGEGSIFTLS 715 I IFE F Q + + K GTGLGLSI R A ++GG I S G G+ F+L+ Sbjct: 637 IDQVHLGRIFEPFYQVEQNAQLK-SGTGLGLSICRRFAQMMGGTIWAMSEPGSGTSFSLT 695 Query: 716 L 716 + Sbjct: 696 V 696 Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 10/116 (8%) Query: 1053 RILVVEDDVRNIFALSSVLEPKGMKVDIARNGREALQALQRSQEQPGA-PIDLVLMDIMM 1111 R+L VED+ N L L G V + NGREAL ++P D +L DI M Sbjct: 833 RVLAVEDNPINQMILKEQLAYLGCDVAFSGNGREAL-------DRPDVMEFDAILTDINM 885 Query: 1112 PEMDGLTAMREIRKQAIWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKL 1167 P +DG +R K PI ++A + +D+++CLAAG N + KPL + L Sbjct: 886 PLVDGYELAERLRGLGYLK--PIFGISANVIPEDEQRCLAAGMNLLMTKPLSLSVL 939 >gi|152982481|ref|YP_001353348.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 459 Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 127/508 (25%), Positives = 220/508 (43%), Gaps = 88/508 (17%) Query: 400 RTRLEELLEETQRQSEELQAQQEELRVNNEELEEQGQALKASQLRLETQQAELEETNAQL 459 R + LL+ R++E+L+ + +L L E Q S+ LE +L E N Sbjct: 21 RQTIAGLLKRIDREAEQLRQKTADLLTQGGALHEATQ----SKHVLEALVVQLREAN--- 73 Query: 460 EEQTQLLELQKEDLAKTQVVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLL 519 E L +D+ + E AN + EFL+ ++HELR PL + A LL Sbjct: 74 -EHLVLAASGAQDMQ----------AKAESANHRQEEFLSMLAHELRNPLAPIAMAADLL 122 Query: 520 ADNKQGNLSDEQV---RFAQTISSAGNDLLALINDILDLSKMEAGKLDIVSESFVVSKLA 576 G +S + IS + + L++D++D S++ G + + S +++++ Sbjct: 123 -----GKISTAHPLLPKLHGIISRQVSHMAHLVDDLVDASRVSTGNITLQKRSLLLAEII 177 Query: 577 EELKASFVVMAQQKSLGFKVEVEPGVPLRMETDMQRLGQILKNLLSNAIKFTE-KGEVSL 635 E + +++ + + P + + D+ RL Q NL+ NA KFT G + + Sbjct: 178 ESAVETSQPFIDKRTQQLTISM-PDASIIIHGDLVRLAQAFANLIINATKFTPVDGHIDI 236 Query: 636 RISLDAGGRIVFAVRDTGIGIGAEQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHL 695 + L + ++D G+GI A+ +IFE FRQ S R GG G+GLS+ R + + Sbjct: 237 LVQLQTS-TVKVVIKDDGVGIAADIQPYIFELFRQGPLSLDRSQGGLGIGLSLVRTVVEM 295 Query: 696 LGGDIEVQSRLGE-GSIFTLSLPQVYRPEQAVMRTALPVPAAAAATLQAAQVATAPDVRI 754 G + V S + GS FT+ LP AA ++ + AP I Sbjct: 296 HTGTVSVYSAGADLGSEFTVELP------------------IAAEFIKDDEEGDAPADAI 337 Query: 755 PGPQVMPTPQKRLQDIAIDDDRDRIEAASRLILVIEDDAAFAMILRDLAHEMGFQCVVTL 814 G + IL+IED+A I L+H + + Sbjct: 338 QGCR---------------------------ILLIEDNANANEI---LSHLLTMEGHTLT 367 Query: 815 SANEGVAAAEMYRPS---AILMDMNLPDFSGLGVLDQIKRNPRTRHIPVHVVSVADYSQE 871 SA +G + EM + + I+ D+ LP G VL +++ + + +P+ ++++ YSQ+ Sbjct: 368 SAFDGTSGLEMAKDNIYDVIVCDIGLPGIDGYEVLRRLRLH-TAKPVPL-CIAISGYSQQ 425 Query: 872 --ALERGAIG---YALKPVQREELVGAI 894 + ++G Y +KPV + LV I Sbjct: 426 ENKMNAASVGFDHYMVKPVAIDALVNFI 453 >gi|152982497|ref|YP_001353355.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 599 Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 121/409 (29%), Positives = 189/409 (46%), Gaps = 53/409 (12%) Query: 488 ERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQTISSAGNDLLA 547 +R+NQ KS+FLA SH+LR P+++ + +L ++ +L+ + + I A + Sbjct: 221 DRSNQAKSQFLAAASHDLRQPVHALSLYVGVL---REQSLNAKSRQLVDHIERATAAMGR 277 Query: 548 LINDILDLSKMEAGKLDIVSESFVVSKLAEELKASFVVMAQQKSLGFKVEVEPGVPLRME 607 L + +L++S+++AG + ++ L ++L+ + A KSL ++ GV + Sbjct: 278 LFDGLLNISRLDAGVIRPRLRHCSLAALLDQLQLEYAPRAATKSLVLRLH--RGVVPAVY 335 Query: 608 TDMQRLGQILKNLLSNAIKFTEKGEVSLRISLDAGGRIV-FAVRDTGIGIGAEQHQFIFE 666 +D L +IL+NL+ NAI+ T+ G V I+ G+ V V DTG+GI A + IF Sbjct: 336 SDPVLLDRILRNLVDNAIRHTQSGGVL--IACRRRGKFVQVEVWDTGVGIAAADQEKIFM 393 Query: 667 AFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIEVQSRLGEGSIFTLSLPQVYRPEQAV 726 F Q + G GLGL+I R A LLG + ++SR G GS+F LS Sbjct: 394 EFHQVGNPERNQSKGLGLGLAIVRRTADLLGHRLILRSRPGRGSVFKLS----------- 442 Query: 727 MRTALPVPAAAAATLQAAQVATAPDVRIPGPQVMPTPQKRLQDIAIDDDRDRIEAASRLI 786 LPV + A A V + PD PG +P+ Q +I Sbjct: 443 ----LPVHSVAEGHAMTASV-SQPD-HAPG---LPSGQ--------------------MI 473 Query: 787 LVIEDDAAFAMILRDLAHEMGFQCVVTLSANEGVAAAEMYR--PSAILMDMNLPDF-SGL 843 V+EDD +R L G+Q V S +E V AA P+ IL D L D +G+ Sbjct: 474 FVVEDDEDNLHGIRLLLETWGYQVVAAASGDEIVQAAGNCPEVPALILTDFRLRDHETGI 533 Query: 844 GVLDQIKRNPRTRHIPVHVVSVADYSQEALERGAIGYAL--KPVQREEL 890 V+D++ I +++ Q E A G+ L KPV L Sbjct: 534 AVIDRLHEEYADDSIAAILMTGDTDPQRLAEAAARGWPLLHKPVDAAHL 582 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,195,149 Number of extensions: 85046 Number of successful extensions: 669 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 614 Number of HSP's successfully gapped: 50 Length of query: 1177 Length of database: 1,221,021 Length adjustment: 94 Effective length of query: 1083 Effective length of database: 873,503 Effective search space: 946003749 Effective search space used: 946003749 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)