BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3341.p
         (283 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979933|ref|YP_001353783.1| CheR chemotaxis protein methylt...    68   7e-13
gi|152980502|ref|YP_001351706.1| CheR chemotaxis protein methylt...    56   3e-09

>gi|152979933|ref|YP_001353783.1| CheR chemotaxis protein
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 292

 Score = 67.8 bits (164), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 25/228 (10%)

Query: 41  LKRRLATAMIRFDCATLSQLQDRVLHDAAVFPALMDYLTVQVSEMFRDPSYFLALREKVV 100
           L RRL    I    + L QL+     +   + A  + LT  ++  FR+  +F  L + + 
Sbjct: 49  LARRLRATGIGSFVSYLDQLEQGGSDEE--WEAFTNALTTNLTSFFREAHHFPILADHIK 106

Query: 101 PLLRTYPSLKIWVAGCSSGEEVYSLAILLRE--EGLLERSIIYATDINQAALKKAEAGVY 158
            +      ++IW +  S+GEE YS+A+   E    L     I ATDI+   L     GVY
Sbjct: 107 KIKE---PIEIWCSAASTGEEPYSIAMTACEAFNTLTPPVRIIATDIDTNVLNTGANGVY 163

Query: 159 ELDRIAGFTSNHQK------AGARTSLSDYYTAAYGAVMFDKSLRKNVVFSDHSL--ATD 210
            +DR+   +    K       GAR           G V     LR+ + F   +L  +  
Sbjct: 164 SIDRLDKMSPERAKRFFLRGKGARE----------GMVRVRPELRQMITFKQVNLLESNW 213

Query: 211 SVFAEMHLVSCRNVLIYFNRHLQERALGLFRESLVRKGFLGLGSKESL 258
            +  +   + CRNV+IYF++  Q + L  F   +   G L  G  E+ 
Sbjct: 214 GISGQFDAIFCRNVMIYFDKPTQGKILDRFAPLMKPDGLLFAGHSENF 261


>gi|152980502|ref|YP_001351706.1| CheR chemotaxis protein
           methyltransferase [Janthinobacterium sp. Marseille]
          Length = 424

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 22/194 (11%)

Query: 74  LMDYLTVQVSEMFRDPSYFLALREKVVPLLRTYPS--LKIWVAGCSSGEEVYSLAILLRE 131
           L++ + V  +  FRD    L+L       +   P   +++    CS+GEE YS+A+ L +
Sbjct: 59  LIELVIVPETWFFRDREAILSLARMARQQIAEKPDRCVRVLSLPCSTGEEPYSVAMALLD 118

Query: 132 EGLLERSI-IYATDINQAALKKAEAGVYELDRIAGFTSNHQKAGARTSLSDY----YTAA 186
            G+   +  I A DI   +L  AE GVY  +   G             L DY    +  +
Sbjct: 119 AGVPSVNFHIDAIDICHRSLAIAERGVYGRNSFRG------------KLLDYRDRHFDTS 166

Query: 187 YGAVMFDKSLRKNVVFSDHSL-ATDSVFAEMH--LVSCRNVLIYFNRHLQERALGLFRES 243
                  + +R+ V F   ++ A D +  E     V CRNVLIYF+R +Q++A+ +    
Sbjct: 167 KDEARLSELVRQQVNFRHGNMFAGDFLLNEKPYDFVFCRNVLIYFDREMQQQAVEVLDRL 226

Query: 244 LVRKGFLGLGSKES 257
           L  +G + +G  E+
Sbjct: 227 LHPQGTIFVGPAEA 240


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 584,708
Number of extensions: 21539
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 201
Effective length of database: 917,867
Effective search space: 184491267
Effective search space used: 184491267
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)