BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3339.p (372 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982481|ref|YP_001353348.1| signal transduction histidine k... 80 2e-16 gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing... 73 3e-14 gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 72 5e-14 gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and... 65 8e-12 gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 62 6e-11 >gi|152982481|ref|YP_001353348.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 459 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 19/228 (8%) Query: 155 EMFVAILGHDLRNPLSAVVMAATLLQR-TYKEEVAQKASQQILNGGKRMAKLIENMLDLA 213 E F+++L H+LRNPL+ + MAA LL + + + K I MA L+++++D + Sbjct: 98 EEFLSMLAHELRNPLAPIAMAADLLGKISTAHPLLPKLHGIISRQVSHMAHLVDDLVDAS 157 Query: 214 RARLAGGIPLARASACLGEITERVVQEYQATYPGSVIERRIE------GDDNGFWDGD-- 265 R G I L + S L EI E V+ Q I++R + D + GD Sbjct: 158 RVS-TGNITLQKRSLLLAEIIESAVETSQ-----PFIDKRTQQLTISMPDASIIIHGDLV 211 Query: 266 RLAQVAANLLGNALQHGVAGSPICIGLDGRSEHEVVLTIANRGV-IPAELLPVIFDPFRG 324 RLAQ ANL+ NA + I I + ++ V + I + GV I A++ P IF+ FR Sbjct: 212 RLAQAFANLIINATKFTPVDGHIDILVQLQTS-TVKVVIKDDGVGIAADIQPYIFELFRQ 270 Query: 325 GGREIGRKE-GLGLGLFIAQQIVKAHGGSITMTS-DDQVQTMVTVRLP 370 G + R + GLG+GL + + +V+ H G++++ S + + TV LP Sbjct: 271 GPLSLDRSQGGLGIGLSLVRTVVEMHTGTVSVYSAGADLGSEFTVELP 318 >gi|152983085|ref|YP_001353411.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 458 Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 34/250 (13%) Query: 138 QLLALELRERTETLRMNEMFVAILGHDLRNPLSA------VVMAATLLQRTYKEEVAQKA 191 +L A+ R + + R+ E F A L H+LR P+S VV+ + Y++ ++ A Sbjct: 221 KLNAMLDRLQNDIARLTE-FSADLAHELRTPISNMLTQTHVVLNQSRSAADYRDSLSSNA 279 Query: 192 SQQILNGGKRMAKLIENMLDLARARLAGGIP------LARASACLGEITERVVQEYQATY 245 + +R+ K I +ML LA+ +P +A+ L E E + +E + T Sbjct: 280 EEL-----QRLGKTISDMLFLAQTENGLALPSVEKLNMAQECQALLEFYEALAEEKEVTL 334 Query: 246 PGSVIERRIEGDDNGFWDGDRLA--QVAANLLGNALQHGVAGSPICIGLDGRSEHEVVLT 303 R EGD GDRL + NLL NAL++ + I I + ++ V+T Sbjct: 335 -------RCEGD--AVVIGDRLMFRRALNNLLSNALRYTPSHGTISIKIKA-AQAGTVVT 384 Query: 304 IANRGV-IPAELLPVIFDPFRGG--GREIGRKEGLGLGLFIAQQIVKAHGGSITMTSDDQ 360 + N G IP E+ P +FD F R+ + GLGL I + I++AHGGS+++ S + Sbjct: 385 VENDGKEIPIEIQPHLFDRFYRADKSRKKSESDSAGLGLSITRAIMQAHGGSVSVVSGES 444 Query: 361 VQTMVTVRLP 370 +T ++ P Sbjct: 445 -KTAFSLYFP 453 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 72.0 bits (175), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 5/227 (2%) Query: 147 RTETLRMNEMFVAILGHDLRNPLSAVVMAATLLQRTYKEEVA--QKASQQILNGGKRMAK 204 R E+ R+ +A + HDLR PL+A+V + L R+ E A Q+ + + RM Sbjct: 664 RMESERLRNSLLAAISHDLRTPLTALVGLSESLTRSKPELAAAQQELAHALHEEALRMGN 723 Query: 205 LIENMLDLARARLAGGIPLARASACLGEITERVVQEYQATYPGSVIERRI-EGDDNGFWD 263 L+ N+LD+AR + +G + L E+ ++ Q+ + R+ G +D Sbjct: 724 LVTNLLDMARIQ-SGEVKLNLQWQQFEEVVGSSLRAVQSLLGRHQVHTRLAPGLPLVNFD 782 Query: 264 GDRLAQVAANLLGNALQHGVAGSPICIGLDGRSEHEVVLTIANRGVIPAELLPVIFDPFR 323 + +V NLL NA ++ AGS I I + ++ V N +P IF+ F Sbjct: 783 AVLIERVLCNLLENASKYTPAGSQITIAAELSGQYLDVAVYDNGPGLPPGQEEAIFEKFT 842 Query: 324 GGGREIGRKEGLGLGLFIAQQIVKAHGGSITMTSDDQVQTMVTVRLP 370 G RE G+GLGL I + I++AH G+I Q + LP Sbjct: 843 RGERE-SATPGVGLGLAICRAIIEAHHGTIRGGHSPQGGAAIIFTLP 888 >gi|152980997|ref|YP_001354642.1| two-component hybrid sensor and regulator [Janthinobacterium sp. Marseille] Length = 1901 Score = 64.7 bits (156), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 31 LLQRDDVELLLARSGLEALELLLQHEVALAFIDVQMPDMDGFELAELIRGSERTRNVPLI 90 LL R+ +++LA+ G++AL+ L + +D++MP MDGF+L IR ERTR++P+I Sbjct: 1795 LLTREGYQVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMDGFDLTRNIRDDERTRDIPII 1854 Query: 91 FVTAGVRDERRLFKGYESGAVDFLYKPIEPHIL 123 +T+ + R + E G ++L KP + +L Sbjct: 1855 MITSRTASKHRNY-AMELGVNEYLGKPYQEDVL 1886 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 62.0 bits (149), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 13/221 (5%) Query: 157 FVAILGHDLRNPLSA-VVMAATLLQRTYKEEVAQKASQQILNGGKRMAKLIENMLDLARA 215 F A L HDLR PL+ +V L + E Q + +R+ +++E+ML LAR Sbjct: 250 FSADLAHDLRTPLNNLMVQTQVALVQARSVEDYQGLLISNVEEYERLTRMVESMLFLARV 309 Query: 216 RLAGGIPLARASACLGEITERVVQEYQATYPGSVIERRIEGDDNGFWDGDRLAQVAANLL 275 + L +++ L E +R+ ++ + + +E + D L + NL+ Sbjct: 310 E-HTHVMLNKSALSLPEELQRIADYFEGLADEAGVRLTVEAGGRVYADAILLRRAIGNLV 368 Query: 276 GNALQHGVAGSPICI----GLDGRSEHEVVLTIANRGV-IPAELLPVIFDPF-RGGGREI 329 NA+ + G+ I + DG + +++ N G I A+ +P +F+ F RG Sbjct: 369 ANAIPYTPRGATIVLKGVMTADGAT-----VSVVNPGAGIAAQHIPHVFNRFYRGDAARS 423 Query: 330 GRKEGLGLGLFIAQQIVKAHGGSITMTSDDQVQTMVTVRLP 370 GLGL I Q I+ HGG T+TS++ T ++ P Sbjct: 424 NSATSTGLGLAIVQSIMALHGGRATVTSEENGLTEFSLIFP 464 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 712,571 Number of extensions: 26337 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 16 Length of query: 372 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 287 Effective length of database: 906,776 Effective search space: 260244712 Effective search space used: 260244712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)