BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3335.p (349 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinoba... 110 1e-25 gi|152982370|ref|YP_001353570.1| hypothetical protein mma_1880 [... 107 9e-25 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 106 3e-24 gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [... 103 1e-23 gi|152980873|ref|YP_001353831.1| hypothetical protein mma_2141 [... 100 2e-22 >gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 408 Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 5/175 (2%) Query: 164 KLAERSRQFEIVSQLDGLTLLFNRRYWENLLAAEFERRRQERAPTHQAFLLLLDLDHFKS 223 K + + E ++ D L FNRRY ++AA +++R L ++DLDHFK Sbjct: 228 KATRKIKDIEEDARRDVLLGCFNRRY---IVAALEQQKRMADESGAPLCLAVIDLDHFKR 284 Query: 224 INDTHGHLIGDEVLRNFSRLLRANLREDDLIGRYGGEEFVVILRDIQPGEALALSQRLVE 283 +ND GHL GDEVLR F+R+ +N+R+ D+ GRYGGEEF+++L + AL +S+R+ Sbjct: 285 VNDEAGHLGGDEVLRTFARVAESNVRKHDIFGRYGGEEFLLVLPETPLSAALNISERIRT 344 Query: 284 AARAANDENNLYG-CTVSAGLVPFSTDMEAYFVWLQRADHAMYCAKESGRDRLVV 337 + + L TVS GL + E+ R D AMY AK+SGR+++VV Sbjct: 345 QIEQHDWQGKLRNRVTVSIGLTQYIAG-ESVLDLFSRTDTAMYMAKQSGRNQVVV 398 >gi|152982370|ref|YP_001353570.1| hypothetical protein mma_1880 [Janthinobacterium sp. Marseille] Length = 389 Score = 107 bits (268), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 86/166 (51%), Gaps = 3/166 (1%) Query: 167 ERSRQFEIVSQLDGLTLLFNRRYWENLLAAEFERRRQERAPTHQAFLLLLDLDHFKSIND 226 E +R+ E ++ LDGLT NRR W E + R P LLLLDLD+FK IND Sbjct: 215 EAARELERLATLDGLTGALNRRAWLLQSGIELAGSVRYRQPIG---LLLLDLDYFKQIND 271 Query: 227 THGHLIGDEVLRNFSRLLRANLREDDLIGRYGGEEFVVILRDIQPGEALALSQRLVEAAR 286 THGH +GD L+ F LR R DL RYGGEEF V+L+ A QR+ + Sbjct: 272 THGHAVGDRALQLFVTGLRTVSRTGDLFCRYGGEEFCVLLKCADLASVTAYDQRMRQWLA 331 Query: 287 AANDENNLYGCTVSAGLVPFSTDMEAYFVWLQRADHAMYCAKESGR 332 + + + + SAG+ D + LQRAD A+Y AK GR Sbjct: 332 QHSPQELGFKLSYSAGITMREHDGDTIDTMLQRADVALYEAKSQGR 377 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 5/165 (3%) Query: 173 EIVSQLDGLTLLFNRRYWENLLAAEFERRRQERAPTHQAFLLLLDLDHFKSINDTHGHLI 232 E +S++D LT FNRRY+ + A EF + R+ P ++ D+D FK IND +GH Sbjct: 442 ERLSRVDALTGAFNRRYFNEVAALEFAKVRRLHQPLS---VISFDIDLFKQINDNYGHAA 498 Query: 233 GDEVLRNFSRLLRANLREDDLIGRYGGEEFVVILRDIQPGEALALSQRLVE--AARAAND 290 GDEV++ +R+ R +RE D + R GGEEF ++L +A A ++RL E A + Sbjct: 499 GDEVIKAAARVSRNAVREIDFVARIGGEEFAILLPGSTIEQAAATAERLRELVIAEQVSY 558 Query: 291 ENNLYGCTVSAGLVPFSTDMEAYFVWLQRADHAMYCAKESGRDRL 335 + L T S G+ +++ LQRAD MY AK GR+R+ Sbjct: 559 QGKLLAFTASFGVAQLKDSDQSFEALLQRADEMMYRAKNLGRNRV 603 >gi|152980290|ref|YP_001353520.1| hypothetical protein mma_1830 [Janthinobacterium sp. Marseille] Length = 417 Score = 103 bits (258), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 96/169 (56%), Gaps = 6/169 (3%) Query: 171 QFEIVSQLDGLTLLFNRRYWENLLAAEFERRRQERAPTHQAFLLLLDLDHFKSINDTHGH 230 E + D LT +R+ E + + R + P LL++DLDHFK INDT+GH Sbjct: 239 NLEDAANHDHLTEALSRKRLEAVAREQILRAGKFGRPLS---LLIIDLDHFKRINDTYGH 295 Query: 231 LIGDEVLRNFSRLLRANLREDDLIGRYGGEEFVVILRDIQPGEALALSQRLVEAARAAND 290 GDEVLR F+R+ RA+LR+ D +GR GGEEF ++L + ALA+++RL E + Sbjct: 296 AGGDEVLREFARMTRASLRDGDALGRLGGEEFGILLPNTDTVGALAIARRLREDSERHLI 355 Query: 291 ENNLYGC--TVSAGLVPFSTDMEAYFVWLQRADHAMYCAKESGRDRLVV 337 C ++S G+ + D E + RAD A+Y AK SGR+R++V Sbjct: 356 SGTFGECHYSISIGIATWR-DGENFDRLSIRADRALYTAKNSGRNRVLV 403 >gi|152980873|ref|YP_001353831.1| hypothetical protein mma_2141 [Janthinobacterium sp. Marseille] Length = 934 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 31/189 (16%) Query: 179 DGLTLLFNRRYWENLLAAEFERRRQERAPT-----HQAFLLLLDLDHFKSINDTHGHLIG 233 D LT LFNRR EFERR + T Q LL LDLD FK +NDT GH G Sbjct: 509 DPLTGLFNRR--------EFERRLEVAIDTLALQSKQHALLYLDLDQFKIVNDTCGHSAG 560 Query: 234 DEVLRNFSRLLRANLREDDLIGRYGGEEFVVILRDIQPGEALALSQRLVEAARAAND--E 291 DE+LR + LL+ +R+ D + R GG+EF L + P A+ ++++L + + + Sbjct: 561 DELLRQITALLQPLVRDSDTLARLGGDEFGAFLENCTPDSAVRIAEKLRQTICDFHFVWQ 620 Query: 292 NNLYGCTVSAGLVPFSTDMEAYFVWLQRADHAMYCAKESGRDRL---------------- 335 + ++ VS GLV F++D + L AD A Y AK++GR+R+ Sbjct: 621 DKIFPIGVSIGLVNFNSDALSLPDLLSAADAACYVAKDTGRNRVHIYRAEDHQLAQNQGE 680 Query: 336 VVWNERLER 344 + WNER+++ Sbjct: 681 IKWNERIQK 689 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 744,467 Number of extensions: 27735 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 28 Length of query: 349 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 265 Effective length of database: 910,473 Effective search space: 241275345 Effective search space used: 241275345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)