BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3334.p
         (479 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981237|ref|YP_001352290.1| D-alanyl-D-alanine carboxypepti...   556   e-159

>gi|152981237|ref|YP_001352290.1| D-alanyl-D-alanine
           carboxypeptidase [Janthinobacterium sp. Marseille]
          Length = 475

 Score =  556 bits (1432), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/464 (58%), Positives = 341/464 (73%), Gaps = 1/464 (0%)

Query: 16  ITFALALLTSAASAAQSLPPPVVGALRVAHIPQQNAGVLVVEADSGKRVLVSNNVSQPFN 75
           + F+  +   AA AA+ LP  V  AL+ + IPQ   G  V E  SG++  ++ N +  FN
Sbjct: 13  LIFSFTVAPFAAYAAEGLPTVVSEALKRSAIPQSAVGTYVQEV-SGQKPWIAVNETTGFN 71

Query: 76  PASVMKLVTTDAALEILGPTYRWKTQAYIDGTLANGVLNGDLILKGGGDPKLVLENFWLF 135
           PAS MKLVT+DAALE+LGPT+ WKTQAY+ GTL   VL+GDLI+KG GDPKLV ENFW F
Sbjct: 72  PASTMKLVTSDAALELLGPTFNWKTQAYMTGTLNGDVLDGDLIIKGSGDPKLVTENFWQF 131

Query: 136 LRQLRARGIKDIRGNLVLDRSYFAESSYDPAQFDGDPQKPYNAGPDALLLNYRTQAFRFE 195
           LR++RA GI++IRGNL+LDRS F +  YD AQFDGDP KPYNAGPDALLLNY+  AF F 
Sbjct: 132 LRKIRAAGIREIRGNLILDRSIFEDMPYDAAQFDGDPLKPYNAGPDALLLNYKVFAFHFL 191

Query: 196 PDVANGVVHVSMDPPMAGVTITPPRLSQEPCGDWQGKLMLDNQANAANFAGTYAADCGPR 255
           P+VA   V +++DPP+A   +  P L+   CGDWQGKL+ +    + NF G+Y+A CG +
Sbjct: 192 PNVARNQVDITIDPPVATYPVMAPALTNGACGDWQGKLLPNMGRVSTNFTGSYSAACGEK 251

Query: 256 VWYVHPYRMTNLQYVGASFVQMWAELGGSFSGRVLNGLVTPTARLMVEVQSPPLPEVIRD 315
            WY+HPY M + +Y G  F Q+W ++GG F+G V NG+V P AR + E QS  LPEVIRD
Sbjct: 252 TWYLHPYLMNHSEYFGVVFRQLWNDVGGVFNGAVNNGMVPPAARFVTEWQSTSLPEVIRD 311

Query: 316 INKYSNNLMARQVLLTLGAEMTGQPGDTTNAVRAVRSWLNDKGIDTSALVIENGAGLSRI 375
           INKYSNN+MARQ+LLT+ A++   P       R V++WL +KG+DTS +VIENG+GLSR 
Sbjct: 312 INKYSNNVMARQLLLTVAADVLKVPASPERGARVVKTWLANKGMDTSQVVIENGSGLSRT 371

Query: 376 DRVTPLLLGSLLVQAYRSPLMPEFVSSLPLVGYDGTMRRRLKTQSVAGQAHIKTGTLNDV 435
           +R+   ++G +LV  ++SP MPEF+SSLPLVGYDGTMR+RL  Q+VAG+AHIKTGTLNDV
Sbjct: 372 ERIPVGVMGRMLVSTFQSPTMPEFMSSLPLVGYDGTMRKRLTKQTVAGRAHIKTGTLNDV 431

Query: 436 RSIAGYVQAASGKSYVVVFLINHAAAPNGQQAQDALLQWVYENG 479
           R+IAGYV AASGK Y VV +INH  A  GQ A DALLQW+YENG
Sbjct: 432 RAIAGYVLAASGKRYAVVCIINHPNAVGGQAAHDALLQWIYENG 475


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,135,741
Number of extensions: 47641
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 392
Effective length of database: 899,382
Effective search space: 352557744
Effective search space used: 352557744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)