BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3332.p
         (284 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982154|ref|YP_001352293.1| hypothetical protein mma_0603 [...   225   2e-60

>gi|152982154|ref|YP_001352293.1| hypothetical protein mma_0603
           [Janthinobacterium sp. Marseille]
          Length = 274

 Score =  225 bits (574), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/243 (55%), Positives = 166/243 (68%), Gaps = 14/243 (5%)

Query: 3   KLLLTCWLLAC-IALVGPARADDGLVAVPPLSAHVIDQIHLLQPQQRQALEGVLAEIEQR 61
           K+L T  LLAC +AL         LV VPPL   V D   +L  +QR  LE VLAE E R
Sbjct: 2   KILRT--LLACTLALFCVLAGAQNLVPVPPLKERVTDLAGMLNAEQRTTLENVLAEYETR 59

Query: 62  TGSQIAVLLMASTAPEAIEQYSIRVAEAWKLGRKGVDDGVILIVAKDNPKSLRRLRIEAG 121
           TG+QIA+LL+ ST PE IEQYSIRVA+AWKLGRKGVDDGV+L+VAKDN  +  RLRIE G
Sbjct: 60  TGNQIAILLLKSTEPEGIEQYSIRVADAWKLGRKGVDDGVLLLVAKDNSAASGRLRIETG 119

Query: 122 RGVQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEQLP-PAKRQAGAA 180
           RGVQG LTDAQSKR+L+DVIAPHFRQ DFYGGLA+GV+ IT+LL++E  P PAKR   +A
Sbjct: 120 RGVQGVLTDAQSKRVLQDVIAPHFRQGDFYGGLASGVSVITSLLDKEAFPEPAKRGQASA 179

Query: 181 HADNSGGWITLMVIVLFLVVFFAMLLKSR--RTARNNLASNDWGRGSSTTAGVIIGSLVD 238
             D      T    + F ++ F ML +SR  R AR + ++ DWG     +AGVI+G+ + 
Sbjct: 180 QDDA----FTWGPFIFFAILIFIMLARSRGGRGARAHSSNGDWG----NSAGVILGTAIG 231

Query: 239 EAL 241
             L
Sbjct: 232 NEL 234


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 537,710
Number of extensions: 20449
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 202
Effective length of database: 917,867
Effective search space: 185409134
Effective search space used: 185409134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)