BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3330.p
         (272 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979998|ref|YP_001352296.1| orotidine 5'-phosphate decarbox...   454   e-129

>gi|152979998|ref|YP_001352296.1| orotidine 5'-phosphate
           decarboxylase [Janthinobacterium sp. Marseille]
          Length = 271

 Score =  454 bits (1168), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/271 (80%), Positives = 243/271 (89%), Gaps = 2/271 (0%)

Query: 1   VTFIEKLNAAWTSRNSLLCVGLDPDLKKFPAELQGKPDAIFEFCRAIIDATADAACAFKP 60
           +TFIEKL+A W S+ + LC+GLDPDL KFPA L+GKPDAI  FC+ IIDATAD ACAFKP
Sbjct: 1   MTFIEKLSAVWQSQKTQLCIGLDPDLAKFPAHLKGKPDAILTFCKEIIDATADTACAFKP 60

Query: 61  QIAYFAALGAEEQLERICAYLRSQYPDIPLVLDAKRGDIGATAEQYAREAFERYDADVVT 120
           QIAYFAAL AE+QLE IC+YLR +YP IP+VLDAKRGDIGATAEQYAREAFERY AD VT
Sbjct: 61  QIAYFAALRAEDQLEAICSYLRERYPHIPIVLDAKRGDIGATAEQYAREAFERYGADAVT 120

Query: 121 VSPYMGWDSVSPYLEWKDRGVIVLCRTSNAGGSDLQFLEVDGKPLYQHVARLVAEKWNTN 180
           V+PYMG+DSV PYLE  DRGVIVLCRTSNAGGSDLQFL VDGKPLYQHVA+LVA+KWNTN
Sbjct: 121 VNPYMGFDSVQPYLERPDRGVIVLCRTSNAGGSDLQFLNVDGKPLYQHVAQLVADKWNTN 180

Query: 181 GQCGLVVGATFPQELAQVRAIIGDMPLLVPGVGAQGGDVQATVNAGKTASGTGMMINSSR 240
           GQC LVVGATFP ELAQVRA++GDMPLL+PG+GAQGGD++ATV AG+TA+GTGMMINSSR
Sbjct: 181 GQCALVVGATFPNELAQVRALVGDMPLLIPGIGAQGGDIKATVEAGRTANGTGMMINSSR 240

Query: 241 AILYAKPEAGEDFAAAARRVAIETRDAINRF 271
           AILYAK  A E FA AAR+VA+ETRDAINR+
Sbjct: 241 AILYAK--ADETFAQAARQVALETRDAINRY 269


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 648,305
Number of extensions: 27234
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 190
Effective length of database: 917,867
Effective search space: 174394730
Effective search space used: 174394730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)