BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3329.p
         (160 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981356|ref|YP_001352297.1| competence/damage inducible pro...   188   2e-49
gi|152981580|ref|YP_001353344.1| CinA C-terminal domain-containi...   117   4e-28

>gi|152981356|ref|YP_001352297.1| competence/damage inducible
           protein CinA [Janthinobacterium sp. Marseille]
          Length = 167

 Score =  188 bits (477), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/159 (64%), Positives = 127/159 (79%)

Query: 1   MDSTLDLATRVGHTLKSKGLLLATAESCTGGGIAHAITEIAGSSEWFDCGFVTYSNASKN 60
           M + ++LA  VG TL+ +GL+LATAESCTGGG+A AITEIAGSSEWF+CGFVTYSN +K 
Sbjct: 1   MANLIELAELVGRTLQQRGLMLATAESCTGGGVAQAITEIAGSSEWFECGFVTYSNEAKM 60

Query: 61  ELLDISEALIAQHGAVSEEIAGAMAEGAVANSNSDVAVSTTGIAGPGGAVPGKPVGTVCF 120
            +L + E  +A+HGAVS E A AMA+GA+ANS + VA+STTGIAGPGG VPGKPVG VCF
Sbjct: 61  AMLKVPEETLARHGAVSYETAQAMAQGALANSRAKVALSTTGIAGPGGGVPGKPVGMVCF 120

Query: 121 GWRVGEKTYTERLVFKGDRQQVRAQTVEHSLKGLLKLLA 159
           GW +GE+   + ++F GDR  VR Q+VEH+L+GLL  LA
Sbjct: 121 GWALGEQVQVDHVIFSGDRHAVREQSVEHALQGLLNFLA 159


>gi|152981580|ref|YP_001353344.1| CinA C-terminal domain-containing
           protein [Janthinobacterium sp. Marseille]
          Length = 153

 Score =  117 bits (292), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 82/137 (59%), Gaps = 4/137 (2%)

Query: 20  LLLATAESCTGGGIAHAITEIAGSSEWFDCGFVTYSNASKNELLDISEALIAQHGAVSEE 79
           + + TAESCT G IA  + E  G   W +  +VTYS  +K E LD+SE  I Q+G  SEE
Sbjct: 1   MKIVTAESCTAGLIASTLAEPPGCGSWLESAYVTYSEDAKMEALDVSEDTIEQYGLTSEE 60

Query: 80  IAGAMAEGAVANSNSDVAVSTTGIAGPGGAVPGKPVGTVCFGWRV----GEKTYTERLVF 135
           +A AMAEGA+  + +++A++TTG+AGP       PVGTVC  W      G + ++E   F
Sbjct: 61  VACAMAEGALKTAKANLALATTGVAGPSAGDGDVPVGTVCLAWTFKCDNGFRHFSETAHF 120

Query: 136 KGDRQQVRAQTVEHSLK 152
            GDR QVR    E +LK
Sbjct: 121 DGDRNQVRQAATEFALK 137


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 306,534
Number of extensions: 9701
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 84
Effective length of database: 940,049
Effective search space: 78964116
Effective search space used: 78964116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)