BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3327.p
         (321 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980240|ref|YP_001352299.1| thiamine-monophosphate kinase [...   439   e-125

>gi|152980240|ref|YP_001352299.1| thiamine-monophosphate kinase
           [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  439 bits (1130), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/321 (68%), Positives = 249/321 (77%)

Query: 1   MLSEFELIARYFSRPPAPDSRTALGVGDDCALMTPAPGMQLAISSDMLVEGRHFFPDADP 60
           MLSEF+LIARYF RP  P +R  LG+GDDCAL+    GMQ+AISSDMLVEGRHFF  ADP
Sbjct: 1   MLSEFDLIARYFVRPGHPKNRATLGIGDDCALLAQQDGMQMAISSDMLVEGRHFFAGADP 60

Query: 61  HTLGHKCLAVNLSDLAAMGAQPIAFTLALALPQARAEWLAPFSQGMLALADQHGCELIGG 120
             LGHK LAVNLSDLAAMGA+P AFTLA +LP A   WLA FS G+  LAD H CELIGG
Sbjct: 61  RKLGHKSLAVNLSDLAAMGAEPTAFTLAFSLPSAEETWLAEFSHGLFELADAHSCELIGG 120

Query: 121 DTTKGPLTISITVFGEVPPQQALRRDAARAGDDIWVSGTLGDARLALAGYRQEFEVHPEQ 180
           DTTKGPL I ITVFG+ P  +ALRRD A+ GDDIWVSGTLGDARLAL    +E+E+  + 
Sbjct: 121 DTTKGPLNICITVFGKTPTGEALRRDTAQTGDDIWVSGTLGDARLALGALYKEYELDAKV 180

Query: 181 LQQAAPRMHAPTPRVALGLALRGIAHAAIDISDGLAGDLGHILARSRVGATLDVDALPSG 240
           L +AA R+H P PRVALGLALRGIAH+A+D+SDGL GDLGHIL +S VGATL++D LP+G
Sbjct: 181 LNKAAVRLHTPQPRVALGLALRGIAHSALDVSDGLIGDLGHILKKSEVGATLNLDDLPAG 240

Query: 241 AALQQRDLHLRRRFTLSGGDDYELCFTAPARQREAVQKAAHAAGTAVTRIGRIDAQTGLR 300
             LQ++   +RRRFTL+GGDDYELCFTAP  +REAV  AA AA T VTRIG IDA  GLR
Sbjct: 241 PMLQKQTQEMRRRFTLAGGDDYELCFTAPVSKREAVLGAAMAADTPVTRIGSIDAAPGLR 300

Query: 301 LLDAAGEPLQETPDSFDHFRS 321
           LLD AG PL     SFDHF S
Sbjct: 301 LLDKAGRPLDLNITSFDHFAS 321


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 796,892
Number of extensions: 32840
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 238
Effective length of database: 914,170
Effective search space: 217572460
Effective search space used: 217572460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)