BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3325.p (467 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 185 4e-48 gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 180 2e-46 gi|152982732|ref|YP_001353683.1| major facilitator transporter [... 180 2e-46 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 163 2e-41 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 141 1e-34 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 185 bits (470), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 129/405 (31%), Positives = 209/405 (51%), Gaps = 20/405 (4%) Query: 15 SATTASTPLSAAEYRKRIFAILGASSGNLVEWFDFYVYSFCA-IYFAPAFFPKGDATSQL 73 ++ TAST AE +K + ++ G ++EW+DF +Y A + F FFP D Sbjct: 5 ASATASTVNPRAEKQKIRSVVFASAIGTIIEWYDFLIYGMAAALVFNKLFFPNIDPLLGT 64 Query: 74 LNTAGVFAAGFLMRPIGGWLFGRIADKHGRKTSMLISVLMMCGGSLAVAIMPTYATIGAW 133 L G +A GFL RP+GG +FG D+ GRK+ ++I++ +M G+ + ++PTY IG W Sbjct: 65 LAALGSYAVGFLARPLGGAIFGHYGDRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIW 124 Query: 134 APALLLLARLFQGLSVGGEYGTSATYMSEVAPNGRRGFFASFQYVTLIGGQLLAVLVLFA 193 AP LL+ R+ QG+ +GGE+G +A + E +P RRGF+ S V G ++A LV F+ Sbjct: 125 APILLITLRIIQGIGLGGEWGGAAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIATLV-FS 183 Query: 194 MQQWLSKAELMAWGWRIPFVLGAVGALVAMYLRSSLAETSSAGARKKKDA----GTIKGL 249 + +A++++WGWRIPF+L AV +V +++R ++ E+ K + A + + Sbjct: 184 FVSKMPEADILSWGWRIPFLLSAVLIIVGIFIRKNVEESPVFEDMKMRKALSKSPVMDVI 243 Query: 250 LQHKRAFLNVVGFTAGGSLMFYTFTTYMQKYLVNTAGMDPKMANGVMTGALFVYMILQPI 309 L+H R F +G Y T +M Y T G+ + + A V ++ P+ Sbjct: 244 LKHPRTFFIAIGLKISEVSWVYMLTVFMVVYATTTLGLPKSLILEAILIAAMVEIVTIPL 303 Query: 310 FGAISDKIGRRNSMLCFSFLGMVCTFPILHFLKDVSSPGVAMALAILALTIVSFYTSISG 369 FG +SD IGRR + + FP+ F+ ++ +P + LT+V + G Sbjct: 304 FGYLSDVIGRRPLYFIGALFTIAFAFPLFLFM-EMRTPEAVI------LTVVVAMSMGHG 356 Query: 370 LIKA-------EMFPPEVRALGVGLSYAVGNAIFGGSAEFVALSL 407 L+ A E+F VR G + V AI GG + +A +L Sbjct: 357 LMFAPEATYFPELFGANVRYSGASFGFQVAAAIGGGLSPIIATAL 401 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 131/388 (33%), Positives = 203/388 (52%), Gaps = 13/388 (3%) Query: 29 RKRIFAILGASS-GNLVEWFDFYVYSFCA-IYFAPAFFPKGDATSQLLNTAGVFAAGFLM 86 + +I I ASS G ++EW+DF +Y A + F FFP L G +A GF Sbjct: 18 KSKIGTIAAASSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSPVIGTLAALGTYAVGFFA 77 Query: 87 RPIGGWLFGRIADKHGRKTSMLISVLMMCGGSLAVAIMPTYATIGAWAPALLLLARLFQG 146 RP+GG +FG D+ GRK+ +L+++ +M G++ + +PTY IG WAP LL++ R QG Sbjct: 78 RPLGGAIFGHFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIWAPVLLIVLRFIQG 137 Query: 147 LSVGGEYGTSATYMSEVAPNGRRGFFASFQYVTLIGGQLLAVLVLFAMQQWLSKAELMAW 206 + +GGE+G +A + E AP RRGF+ S V G +LA V FA+ L +A+ ++W Sbjct: 138 VGLGGEWGGAALMVLEHAPKHRRGFYGSLVQVGFPLGLVLATGV-FAIVSKLPEADFLSW 196 Query: 207 GWRIPFVLGAVGALVAMYLRSSLAETSSAGARKKKDA----GTIKGLLQHKRAFLNVVGF 262 GWRIPF+L V +V +RS + E+ K K+ + +L++ RAFL +G Sbjct: 197 GWRIPFLLSIVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPVLDAILKNPRAFLTAIGL 256 Query: 263 TAGGSLMFYTFTTYMQKYLVNTAGMDPK--MANGVMTGALFVYMILQPIFGAISDKIGRR 320 Y T ++ + N + PK + +G++ AL V +I P+FG +SDK+GRR Sbjct: 257 KISEVSWVYILTVFIVVHATNNLQL-PKSLILDGILYAAL-VEVITIPLFGLLSDKVGRR 314 Query: 321 NSMLCFSFLGMVCTFPILHFLKDVSSPGVAMALAILALTI-VSFYTSISGLIKAEMFPPE 379 + + + FP L L D + + + I+AL++ F + E+F Sbjct: 315 PMYIWGALFTVALAFP-LFILLDTRDSAIIIGVMIVALSLGHGFMFAPEATYFPELFGAN 373 Query: 380 VRALGVGLSYAVGNAIFGGSAEFVALSL 407 VR G L + V AI GG + +A L Sbjct: 374 VRYSGATLGFQVAAAIGGGLSPIIATGL 401 >gi|152982732|ref|YP_001353683.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 553 Score = 180 bits (456), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/347 (34%), Positives = 193/347 (55%), Gaps = 13/347 (3%) Query: 16 ATTASTPLS-AAEYRKRIFAILGASSGNLVEWFDFYVYSFCAIYFAPAFFPKGDATSQLL 74 AT ++T S E RK IFA +S G + EW+DFY+Y A A FF D + + Sbjct: 2 ATVSTTDRSITPEERKVIFA---SSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFI 58 Query: 75 NTAGVFAAGFLMRPIGGWLFGRIADKHGRKTSMLISVLMMCGGSLAVAIMPTYATIGAWA 134 FAAGF++RP G +FGR+ D GRK + L+++++M + V ++P YA+IG A Sbjct: 59 FALLAFAAGFIVRPFGAIVFGRLGDMIGRKYTFLVTIVIMGTSTFIVGLLPNYASIGIAA 118 Query: 135 PALLLLARLFQGLSVGGEYGTSATYMSEVAPNGRRGFFASFQYVTLIGGQLLAVLVLFAM 194 P +L++ R+ QGL++GGEYG +ATY++E AP+G+RG F S+ T G +++LV+ Sbjct: 119 PIILIILRILQGLALGGEYGGAATYVAEHAPHGKRGAFTSWIQTTATMGLFMSLLVILGT 178 Query: 195 QQWLSKAELMAWGWRIPFVLGAVGALVAMYLRSSLAETSSAGARKKKDAGTIKGLLQH-- 252 + + + WGWRIPF++ +++++R S+ E S A + K + K L Sbjct: 179 RTAMGEEAFADWGWRIPFLVSVFLLGISVWIRLSMNE-SPAFLKMKSEGKASKAPLTEAF 237 Query: 253 ------KRAFLNVVGFTAGGSLMFYTFTTYMQKYLVNTAGMDPKMANGVMTGALFVYMIL 306 K L ++G TAG ++++YT Y +L T +D AN ++ +L + Sbjct: 238 AKWGNLKIVILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGPTANILIAASLLLATPF 297 Query: 307 QPIFGAISDKIGRRNSMLCFSFLGMVCTFPILHFLKDVSSPGVAMAL 353 IFG++SDKIGR+ ++ + + FPI + L ++P + AL Sbjct: 298 FVIFGSLSDKIGRKPIIMAGCLIAALTYFPIFNALTHYANPALEAAL 344 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 163 bits (412), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/346 (31%), Positives = 183/346 (52%), Gaps = 16/346 (4%) Query: 17 TTASTPLSAAEYRKRIFAILGASSGNLVEWFDFYVYSFCAIYFAPAFFPKGDATSQLLNT 76 +T + +A E R+ +L ++ G + EW+DF++Y AI+ + FP + T+ LL + Sbjct: 8 STEADVFTAKEERQ---VVLASTLGTIFEWYDFFIYGSLAIFMSSVLFPPDNPTAALLAS 64 Query: 77 AGVFAAGFLMRPIGGWLFGRIADKHGRKTSMLISVLMMCGGSLAVAIMPTYATIGAWAPA 136 G AAGF++RPIG LFG + D+ GRK + L++++MM G + + +P+YA++G A Sbjct: 65 LGALAAGFVIRPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWI 124 Query: 137 LLLLARLFQGLSVGGEYGTSATYMSEVAPNGRRGFFASFQYVTLIGGQLLAVLVLFAMQQ 196 L++ RL QGL+VGGEYG + Y++E + RRG + +T G +L++ V+ Q Sbjct: 125 SLVVLRLVQGLAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVILGTQA 184 Query: 197 WLSKAELMAWGWRIPFVLGAVGALVAMYLRSSLAETS-----SAGARKKKDA--GTIKGL 249 + A WGWR+PF++ + ++Y+R+ L E+ A R K+ T Sbjct: 185 TMDMASFKEWGWRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQGRLSKNPVRDTFFKW 244 Query: 250 LQHKRAFLNVVGFTAGGSLMFYTFTTYMQKYLVNTAGMDPKMANGVMTGALFVYMILQP- 308 K L + G TAG ++T Y+ +L +D + V T ++I P Sbjct: 245 PSLKMILLALFGVTAGQGATYFTGQFYVMIFLQQAVMLDQRT---VYTLICIGFLIGAPA 301 Query: 309 --IFGAISDKIGRRNSMLCFSFLGMVCTFPILHFLKDVSSPGVAMA 352 FG +SD++GR+ M+ F+ +C P+ L + +P +A A Sbjct: 302 FVFFGWLSDRLGRKWIMMAGLFIAALCYRPMFASLLEAGNPALAAA 347 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 109/371 (29%), Positives = 179/371 (48%), Gaps = 10/371 (2%) Query: 41 GNLVEWFDFYVYSFCAIYFAPA-FFPKGDATSQLLNTAGVFAAGFLMRPIGGWLFGRIAD 99 G +E+FDFY+Y+ A+ P FFP + T+ +L + FA F RP+G +FG D Sbjct: 24 GTTIEFFDFYIYATAAVLVFPTLFFPSSNPTAGMLQSLATFAIAFFARPVGSAVFGHYGD 83 Query: 100 KHGRKTSMLISVLMMCGGSLAVAIMPTYATIGAWAPALLLLARLFQGLSVGGEYGTSATY 159 + GRK +++ ++L M ++ + ++PTY IG AP LL L R QGL +GGE+G + Sbjct: 84 RIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLLLALCRFGQGLGLGGEWGGAVLL 143 Query: 160 MSEVAPNGRRGFFASFQYVTLIGGQLLAVLVLFAMQQWLSKAELMAWGWRIPFVLGAVGA 219 +E AP G+ ++ F + G L+ + + + L+ + ++GWRIPF+ AV Sbjct: 144 ATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSETLTNEQFFSYGWRIPFIASAVLV 203 Query: 220 LVAMYLRSSLAETS------SAGARKKKDAGTIKGLLQHKRAFLNVVGFTAGGSLMFYTF 273 LV +Y+R + ET R K TI +H R + ++FY Sbjct: 204 LVGLYVRLKITETPVFQKVLDKNERVKVPIATI--FREHSRVLVLGTIIATATFVLFYLM 261 Query: 274 TTYMQKYLVNTAGMDPKMANGVMTGALFVYMILQPIFGAISDKIGRRNSMLCFSFLGMVC 333 T + + G K + A+ + + PI ++DK GRR +M+ S M+ Sbjct: 262 TVFALSWGTTGLGYTRKEFLILQLFAVVFFALTIPISALLADKYGRRITMILVSIAIMLF 321 Query: 334 TFPILHFLKDVSSPGVAMALAILALTIVSFYTSISGLIKAEMFPPEVRALGVGLSYAVGN 393 F I + GV L+ L L ++ G + +E+FP E+R GV L++ +G Sbjct: 322 GFLISPMFVAHDAIGVTFFLS-LGLALMGMTYGPLGTMLSELFPTEIRYTGVSLTFNLGG 380 Query: 394 AIFGGSAEFVA 404 + A + A Sbjct: 381 IVGASLAPYAA 391 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,022,756 Number of extensions: 41490 Number of successful extensions: 232 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 6 Length of query: 467 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 380 Effective length of database: 899,382 Effective search space: 341765160 Effective search space used: 341765160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)