BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3324.p (602 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982047|ref|YP_001352158.1| signal transduction histidine k... 122 5e-29 gi|152982333|ref|YP_001354112.1| two-component sensor histidine ... 117 2e-27 gi|152982390|ref|YP_001355364.1| signal transduction histidine k... 112 8e-26 gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 79 7e-16 gi|152982019|ref|YP_001352553.1| serine/threonine kinase protein... 79 1e-15 >gi|152982047|ref|YP_001352158.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/259 (33%), Positives = 141/259 (54%), Gaps = 21/259 (8%) Query: 357 QQTESLLRTTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNSLKFLARGQTVQV 416 ++ E L R + +L + +LA +G++A+ + HELNQPLAAI ++ +L L R ++ Sbjct: 414 KRVEDLNRQQEEKLQASARLATMGEIASTLAHELNQPLAAISSYTTGALNMLERDKSKAA 473 Query: 417 AENLEHISHASAR-------MGKIIGQLKGFARKSGEAVAAVDLRQSIEASVLLLSSDFQ 469 N++ ++HA + G+II + F +K AV + + I+ L+ Q Sbjct: 474 EVNIDMLTHALEKAQAQAQRAGQIIRSVHTFVKKREPMRTAVTIEELIDNVAPLVELQAQ 533 Query: 470 KQDVQVRI---EGEPAVLVMGDAVRTEQVLINLLRNALDAVEE-APRKCI----CVLLQA 521 K V ++I + PAVL D V EQVL+NL RNA+++++ AP K + + ++ Sbjct: 534 KYFVFIKIDIPDNLPAVL--ADHVLLEQVLLNLTRNAIESMQSIAPEKRVLRIAAAIDES 591 Query: 522 DPLRQQALVSIRDSGPGIADEVAPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSA 581 DP +VSI D G GI EVA L+ PFF+TK+ G+G+GL+I + ++ G L+ Sbjct: 592 DP--PNVVVSISDQGHGIPPEVAERLYSPFFSTKAD--GMGMGLSICRTAIEFHGGTLTH 647 Query: 582 HNHEQGGAEFVVRLPLLKT 600 ++ GG F LP L+ Sbjct: 648 ADNPGGGTIFRFSLPTLQN 666 >gi|152982333|ref|YP_001354112.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 587 Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 6/235 (2%) Query: 370 LVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNSLKFLARGQTV--QVAENLEHISHAS 427 L +L +G++ A + HE+NQPL AI A AD + L + ++ L I + Sbjct: 351 LAHVARLGSVGELTASIVHEINQPLGAILANADAATMMLNQQSHPDHELRAILADIRDDN 410 Query: 428 ARMGKIIGQLKGFARKSGEAVAAVDLRQSIEASVLLLSSDFQKQDVQVRIEGEPAV-LVM 486 R II +L+ K V L + I+ S LL + K V + IE P + ++M Sbjct: 411 LRASLIIQKLRVLLSKRSLESKPVSLNEVIDTSRSLLGNLAIKHHVMMAIELAPDLPMIM 470 Query: 487 GDAVRTEQVLINLLRNALDAVEEAPRKCICVLLQADPLRQQAL-VSIRDSGPGIADEVAP 545 GD+ +QVLINL NA++A+E P + ++ + + + + D GPGI + P Sbjct: 471 GDSTHLQQVLINLASNAMEAMEAVPPAQRTLSIKTEQCNASHIRLIVADKGPGIPTNILP 530 Query: 546 HLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVRLPLLKT 600 ++FE F+TTK +G+G+GLAI +IV A G + N GGA FV+ P+ K Sbjct: 531 NIFESFYTTK--PEGMGMGLAIVQTIVDAHCGLIETFNDPAGGAAFVITFPIAKN 583 >gi|152982390|ref|YP_001355364.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 671 Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 148/295 (50%), Gaps = 28/295 (9%) Query: 309 QHRRRLQERLASRDA-LRRAAQELDQKIAQRTEELTAANQAIAAKYAKLQQTESLLRTTQ 367 +H L E + ++A L+ ELD+K+ +RT A+L+QT LL Q Sbjct: 395 RHLDDLLETVQQQNAELKSWGNELDRKVVERT--------------AELEQTNKLLVQAQ 440 Query: 368 NELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFAD---NSLKFLARGQTVQVAENLEHIS 424 +LV A KLA +G++ AGV HE+N P+A ++ D ++L A+ V L+ + Sbjct: 441 QQLVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAAK----PVQGELQLMD 496 Query: 425 HASARMGKIIGQLKGFARKSGEA--VAAVDLRQSIEASVLLLSSDFQKQDVQVRIEGEPA 482 R+ I+ +L FA A V V + + + S++L+ + + V + E Sbjct: 497 QQIYRINTIVTKLLQFASPGEFAGYVETVVIDEIVADSLVLVRHLLNQSRIAVVHKKEAT 556 Query: 483 VLVMGDAVRTEQVLINLLRNALDAVEEAPRKCICV--LLQADPLRQQALVSIRDSGPGIA 540 + V + +QVLINL NA+ A+++ I +AD R A +S+ D+G GI Sbjct: 557 LPVSINRGELQQVLINLFTNAIHAMKDGGSLTISTSDWQEADGKRGVA-ISVADTGSGIR 615 Query: 541 DEVAPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVRL 595 E H+F+ FFTTK G GLGL+IS ++V G ++ + E G EF VRL Sbjct: 616 KEDIAHIFDAFFTTKRQG-GTGLGLSISYTLVARYGGTITVRSEEGAGTEFTVRL 669 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 16/243 (6%) Query: 363 LRTTQNELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNSLKFLARGQTVQVAENLEH 422 + Q+ L++ + + A ++H+L PL A+ +++ + ++ + + L H Sbjct: 655 IEVAQDALLRMESERLRNSLLAAISHDLRTPLTALVGLSESLTR--SKPELAAAQQELAH 712 Query: 423 ISHASA-RMGKIIGQLKGFAR-KSGEAVAAVDLRQSIE---ASVLLLSSDFQKQDVQVRI 477 H A RMG ++ L AR +SGE + +Q E +S+ + S + V R+ Sbjct: 713 ALHEEALRMGNLVTNLLDMARIQSGEVKLNLQWQQFEEVVGSSLRAVQSLLGRHQVHTRL 772 Query: 478 -EGEPAVLVMGDAVRTEQVLINLLRNALDAVEEAPRKCICVLLQADPLRQQALVSIRDSG 536 G P LV DAV E+VL NLL NA + I L L V++ D+G Sbjct: 773 APGLP--LVNFDAVLIERVLCNLLENASKYTPAGSQITIAAELSGQYLD----VAVYDNG 826 Query: 537 PGIADEVAPHLFEPFF--TTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVR 594 PG+ +FE F +S++ G+GLGLAI +I++A +G + + QGGA + Sbjct: 827 PGLPPGQEEAIFEKFTRGERESATPGVGLGLAICRAIIEAHHGTIRGGHSPQGGAAIIFT 886 Query: 595 LPL 597 LPL Sbjct: 887 LPL 889 >gi|152982019|ref|YP_001352553.1| serine/threonine kinase protein [Janthinobacterium sp. Marseille] Length = 1667 Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 83/291 (28%), Positives = 137/291 (47%), Gaps = 30/291 (10%) Query: 329 QELDQKIAQRTEELTAANQAIAAKYAKLQQTESLLRTTQNELVQAGKLAMLGQMAAGVTH 388 +L+QKI RT QA+ K +L T + LR TQ +LV++ KLA LGQ+ AGV H Sbjct: 1364 NDLEQKIEART-------QALIQKNTELHDTLNSLRRTQKQLVESAKLASLGQLVAGVAH 1416 Query: 389 ELNQPL------AAIRAFADNSLKFLARGQTVQVAENLEHISHASA----------RMGK 432 E+N PL A+ A LK L + ++ ++ ++ A R Sbjct: 1417 EINTPLGVGVTGASTLAEETARLKSLFQSGAMKRSDLDAYVGTAGTISKLLLSNMERAAT 1476 Query: 433 IIGQLKGFA-RKSGEAVAAVDLRQSIEASVLLLSSDFQKQDVQVRIEGEPAVLVMGDAVR 491 +I K A ++ E L+ I+ + LS ++ + +V ++ + A+ V Sbjct: 1477 LIQSFKDVAVDQTSEERRTFRLKAYIDEILSNLSPMLRRSEHRVAVDCDEAIEVDTYPGA 1536 Query: 492 TEQVLINLLRNAL--DAVEEAPRKCICVLLQADPLRQQA---LVSIRDSGPGIADEVAPH 546 QV+ NL+ N+L + P + + V+ Q+ +S+ D+G GI E Sbjct: 1537 LSQVITNLVMNSLLHAFTDHVPGEILIVVRSVYEQGQETDMIELSLSDNGQGIPQENLAK 1596 Query: 547 LFEPFFTTKSSSKGLGLGLAISSSIV-QAMNGQLSAHNHEQGGAEFVVRLP 596 +F+PFFTT G GLGL I ++V ++ GQ++ + G F++R P Sbjct: 1597 IFDPFFTTTRGRGGSGLGLNIVHNLVTSSLQGQIAVESQLGVGTTFILRFP 1647 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,132,199 Number of extensions: 43655 Number of successful extensions: 259 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 24 Length of query: 602 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 513 Effective length of database: 891,988 Effective search space: 457589844 Effective search space used: 457589844 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)