BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3323.p (445 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 278 3e-76 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 255 3e-69 gi|152979868|ref|YP_001354671.1| two-components system response ... 240 1e-64 gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 208 6e-55 gi|152982294|ref|YP_001354298.1| transcriptional regulator [Jant... 195 5e-51 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 278 bits (712), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 154/367 (41%), Positives = 224/367 (61%), Gaps = 12/367 (3%) Query: 12 LIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSGLQVLA 71 +++D++++R +AL E + ++A +AL L P VLV+D+R+PG SGL++L Sbjct: 6 IVDDDESIRWVLEKALARENLATKSFSNARDALEALKTGAPQVLVSDIRMPGESGLELLQ 65 Query: 72 HVVAIDADLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQEKRSLVLE 131 V A LPVI++T D+ AV A + GA++++ KPF D + + RA E+ Sbjct: 66 AVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDHAVGLIRRALEES----- 120 Query: 132 NRRLREAWAQ--DPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVVARQL 189 LRE + E P ++GQ+PA++ V I L ++V VLI G++GSGKE+VAR L Sbjct: 121 ---LRETSVEQVSAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARAL 177 Query: 190 HAASGRKG-PFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYAHGGTLFLDEI 248 H S R PF+ALN A+P+ + ESE+FGHE GAFTGAQ R G+ E A GTLFLDEI Sbjct: 178 HKHSPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQATRRGRFEQAENGTLFLDEI 237 Query: 249 ESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKVDLLKLAGQGQFREDLYYRI 308 MP LQ +LLRVL + R+GG++ + + RV+AA+ +L +G FREDLY+R+ Sbjct: 238 GDMPFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLYHRL 297 Query: 309 GVVAIDLPALHQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQREWPGNVRELR 368 V+ + LP+L +R DIP+L HF Q +A + EV + + MQ E PGNVR+L Sbjct: 298 NVIRLRLPSLRERREDIPILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGNVRQLE 357 Query: 369 NFADRWV 375 N + W+ Sbjct: 358 NLCN-WI 363 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 255 bits (652), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 159/436 (36%), Positives = 231/436 (52%), Gaps = 4/436 (0%) Query: 9 SAILIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSGLQ 68 S ++++DE +R + L V A S E A LL + +++ D LPG SG+ Sbjct: 44 SILIVDDEPGMRSFLQRTLVGRCSRVEAVDSVEAANVLLGQQHFDLIILDNSLPGKSGVD 103 Query: 69 VLAHVVAIDADLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQEKRSL 128 L + + V+++T D+ A+ A+RAGA DF+ KPF + +L R ++ L Sbjct: 104 WLQEIRELGLHNDVVLITAFADLETAIRALRAGAADFLLKPFRVNQILSAIGRCFDRAHL 163 Query: 129 VLENRRLREAWAQDPELPP---LVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVV 185 EN LR +L LVG S A+E +R I+ L VLI G++G+GKE+ Sbjct: 164 RRENFILRRELDSHIDLAGVEGLVGASAALEPIREAIKRLATVPSTVLITGESGTGKEIA 223 Query: 186 ARQLHAASGRK-GPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYAHGGTLF 244 AR +H S R FV +NCGA+ + ESE+FGH GAF+GA R G YA GGTLF Sbjct: 224 ARAMHKLSNRSHNHFVPINCGAVAPDIIESELFGHIKGAFSGAASSREGLFFYAQGGTLF 283 Query: 245 LDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKVDLLKLAGQGQFREDL 304 LDE+ +PLA+QVKLLRVL+E+R+ +G + +D RV+AA+ ++ + +G+FR+DL Sbjct: 284 LDEVAELPLAMQVKLLRVLEEKRIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDL 343 Query: 305 YYRIGVVAIDLPALHQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQREWPGNV 364 YYR+ VV + +P L +R+ DIP L +F + A + +A WPGNV Sbjct: 344 YYRLNVVQLHMPPLRERTEDIPALAEYFVRQLAQQLGVPAKKPDSALFASLAGYSWPGNV 403 Query: 365 RELRNFADRWVLGVEQMAGTGLPVGAQPALPLPEQVEQFEAGLIAAALKDSEGSVALAAE 424 RELRN +RW++ T +E E I L + G+ A Sbjct: 404 RELRNLIERWLILGNISDVTAANNTGSTTTNGDVTLEAVEKQHILKILAEVGGNKTEAGR 463 Query: 425 RLGIPRKTLYDKIRKY 440 RLGI RKTL K ++ Sbjct: 464 RLGISRKTLERKCAEW 479 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 240 bits (612), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 161/480 (33%), Positives = 248/480 (51%), Gaps = 59/480 (12%) Query: 7 APSAILIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVRLPGWSG 66 +P ++++DE +R L G + + + A L + +++TD+RLP G Sbjct: 3 SPRILIVDDEADLRELLEITLVKMGLDIDSAQNLAVARDYLQQHEYALVLTDMRLPDGLG 62 Query: 67 LQVLAHVVAIDADLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFGSDSLLEIALRAQEKR 126 ++++ + A + PV V+T G AV A++AGA+D++ KP G + L R Sbjct: 63 IELVQEITAQYKNTPVAVITAFGSADNAVVALKAGAFDYLSKPVGLEQL----------R 112 Query: 127 SLVLENRRLREAWAQ-------DPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTG 179 +V R+ +A Q P L L+GQS A+ +R I L + V I+G++G Sbjct: 113 VMVRSALRISQADEQPSAKVAVSPALR-LMGQSEAMLALRAQIARLARSMAPVAISGESG 171 Query: 180 SGKEVVARQLHAASGRKG-PFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYA 238 SGKE+ AR +HA S R PFVA+NCGA+PE + E+E FG+ GAFTGA R G + A Sbjct: 172 SGKELAARDIHAQSARSDKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAVDDRDGFFQAA 231 Query: 239 HGGTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKVDLLKLAGQG 298 +GGTL LDE+ +PLA+QVKLLR +QERR+ ++G +D R+++A+ +L G+G Sbjct: 232 NGGTLLLDEVADLPLAMQVKLLRAIQERRVRKVGATTEEPVDVRIISATHQNLHDCVGRG 291 Query: 299 QFREDLYYRIGVVAIDLPALHQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQR 358 FR+DLYYR+ V+ ++LP L +R DI LL +A R T A ++ Q Sbjct: 292 TFRQDLYYRLNVIELNLPPLRERLDDIALL----AKAILTRLDAGQARLTPAALEALLQY 347 Query: 359 EWPGNVRELRN-------FADRWVLGVEQM---------------------------AGT 384 +PGNVREL N FA+ V+ V + A Sbjct: 348 SFPGNVRELENILERALAFANDGVIEVSDLVLKAAHTPKAVAAEMVEALAVPEQAMVAPD 407 Query: 385 GLPVGAQPALP--LPEQVEQFEAGLIAAALKDSEGSVALAAERLGIPRKTLYDKIRKYQL 442 P+ A LP LP+ ++ E +I AL ++ + AAE LGI + L ++++ + Sbjct: 408 AKPLAATSDLPGSLPDHLDDVEREIIRRALSKTQFNRTQAAELLGISFRQLRYRMQRLDI 467 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 208 bits (529), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 125/333 (37%), Positives = 192/333 (57%), Gaps = 22/333 (6%) Query: 121 RAQEK-RSLVLENRRLREAWAQDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTG 179 RAQEK +E +LR +P + L+ +SP ++++ L + + VLI+G++G Sbjct: 223 RAQEKLHRFEMEVSQLR---MDNPAIAGLITRSPGMQQITALAQKVAKVSATVLISGESG 279 Query: 180 SGKEVVARQLHAASGRK-GPFVALNCGALPETVFESEIFGHEAGAFTGAQKR-RIGKLEY 237 GKEV+ R +H S GPFV +NCGA+P + ESE+FG+EAGAFTGAQ++ ++G +E Sbjct: 280 VGKEVLTRLIHKESAHHAGPFVKINCGAIPRDLLESELFGYEAGAFTGAQRQGKVGMIEV 339 Query: 238 AHGGTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKVDLLKLAGQ 297 A GTLFLDEI +PL LQVKLL+VLQ+R L RLGG + +D RVVAA+ DL + Sbjct: 340 ADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRLGGTRPIQVDVRVVAATNRDLQAMVDA 399 Query: 298 GQFREDLYYRIGVVAIDLPALHQRSSDIPLLLAHFCQAAAVRY--RREVPPWTAAQMQQW 355 QFR DL+YR+ VV + +P L +R DI L+ H+ +Y + + A + + Sbjct: 400 RQFRSDLFYRLNVVPLHVPPLRERREDILPLIQHYLDELNAQYDLDKRLSEQALAALLDY 459 Query: 356 QQREWPGNVRELRNFADRWVLGVEQ--MAGTGLPVGAQPA--------LPLPEQVEQFEA 405 +WPGNVRELRN +R V+ + + LP + + L + + FE Sbjct: 460 ---DWPGNVRELRNMVERLVVTAPESLIRSDSLPTLLRSSELESDLARLDIKARSAHFER 516 Query: 406 GLIAAALKDSEGSVALAAERLGIPRKTLYDKIR 438 ++ A+ + G+ AA+ L + + T+ +++ Sbjct: 517 KIVKEAV-ERYGNTRAAAKHLQVSQSTVVRRLK 548 >gi|152982294|ref|YP_001354298.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 371 Score = 195 bits (495), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 169/307 (55%), Gaps = 15/307 (4%) Query: 148 LVGQSPAIERVRTLIRSLGPADVDVLINGQTGSGKEVVARQLHAASGRKG-PFVALNCGA 206 L G S ++++ +I + P +VLI G++G+GKE+VA+ +H S + PFVALNC A Sbjct: 45 LYGASAPMQQLFQMIGKVAPTTANVLIAGESGTGKELVAQAIHQLSREQDKPFVALNCSA 104 Query: 207 LPETVFESEIFGHEAGAFTGAQKRRIGKLEYAHGGTLFLDEIESMPLALQVKLLRVLQER 266 + + E+E+FGHE G+FTGA + + G E A GGTLFLDE+ M L +QVKLLRVL+ Sbjct: 105 VSPQLIEAELFGHERGSFTGAIRMQKGCFERADGGTLFLDEVTEMSLDMQVKLLRVLETS 164 Query: 267 RLERLGGNESVAIDCRVVAASKVDLLKLAGQGQFREDLYYRIGVVAIDLPALHQRSSDIP 326 R R+G E + RVVAA+ D ++ G R DL+YR+ V +DLP L +R DI Sbjct: 165 RFCRIGAEEETEVKVRVVAATNRDPVEAMKSGILRSDLFYRLAVFPLDLPPLRERGEDIR 224 Query: 327 LLLAHFC-QAAAVRYRREVPPWTAAQMQQWQQREWPGNVRELRNFADRWVLGVEQ----- 380 LL F Q R V ++ A + + WPGNVREL+N R + +Q Sbjct: 225 LLAGLFLDQLNEEDGRNRV--FSKASWRLLNEYNWPGNVRELKNVVHRAYIMADQELELL 282 Query: 381 ------MAGTGLPVGAQPALPLPEQVEQFEAGLIAAALKDSEGSVALAAERLGIPRKTLY 434 + +G + L ++ E LI A L G+ L AE LG+ KTLY Sbjct: 283 PAVNPNRSMVSDQIGDCVTVQLGSKLADAEQRLIYATLGHCGGNKTLTAEVLGVSLKTLY 342 Query: 435 DKIRKYQ 441 +++ +YQ Sbjct: 343 NRLNEYQ 349 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,066,661 Number of extensions: 47030 Number of successful extensions: 263 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 257 Number of HSP's successfully gapped: 19 Length of query: 445 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 359 Effective length of database: 903,079 Effective search space: 324205361 Effective search space used: 324205361 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)