BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3320.p
         (222 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981902|ref|YP_001352059.1| hypothetical protein mma_0369 [...   105   2e-24

>gi|152981902|ref|YP_001352059.1| hypothetical protein mma_0369
           [Janthinobacterium sp. Marseille]
          Length = 319

 Score =  105 bits (263), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 16/216 (7%)

Query: 18  LAGCATENSRSLPV------AQVASAQQAYQGP-----RSPIAVGKFDNRSSYLRGI-FN 65
           L  CA  ++ + PV      AQ   AQ+    P     +  IA+G+F N + Y +    +
Sbjct: 14  LGACAVTSTPTQPVEAPVSRAQQIEAQKQVAAPQVKTLKRKIAIGRFTNETRYGKTFQVD 73

Query: 66  DGVDRLGGQAKTILITHLQQSNRFSVMDRDNMGELAQEAKLNKQTQALKGANYVVTGDVT 125
             +D LG QA  +L + L  SN+F   +R ++ ++  E  L K+   L G + ++ G VT
Sbjct: 74  SNLDPLGKQASDMLNSRLISSNKFLTFERSDLEKIKNEQALLKEGN-LIGVDTLILGSVT 132

Query: 126 EFGRKETGDRQLFGILGRGKSQVAYAKVSLNIVDVNTSQVVYSAQGAGEYSLGNREIIGF 185
           EFGR  TG     G L   K Q A AK+ + +VD  T  + ++A G GE +  + EI GF
Sbjct: 133 EFGRSTTGKS---GFLSATKIQTARAKIEIRLVDARTGFLFFTATGTGEATSESGEIAGF 189

Query: 186 GGTASYDSTLNGKVLDLAIREAVQNLVTGIDSGAWK 221
           G  A YD TLN + +  AI +    L+  ++   W+
Sbjct: 190 GSKADYDGTLNDRAIGAAISDVQNALIAKLEERPWR 225


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 446,311
Number of extensions: 18047
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 142
Effective length of database: 925,261
Effective search space: 131387062
Effective search space used: 131387062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)