BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3313.p
         (332 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982516|ref|YP_001352817.1| hypothetical protein mma_1127 [...   401   e-113
gi|152981277|ref|YP_001354543.1| M48 family peptidase [Janthinob...    75   5e-15

>gi|152982516|ref|YP_001352817.1| hypothetical protein mma_1127
           [Janthinobacterium sp. Marseille]
          Length = 329

 Score =  401 bits (1030), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/332 (57%), Positives = 248/332 (74%), Gaps = 3/332 (0%)

Query: 1   MTISATYYDGKSSRPHQVTLQVSNGVAQLRGEVERECPIAELRVSERFTRAARKVSFPDG 60
           M+I A Y+DGK+SR HQVTL V  G A + G+ ER CPI+ELRVSER     RKV+FPD 
Sbjct: 1   MSIPALYFDGKTSRAHQVTLSVEGGHATISGDAERSCPISELRVSERARNTKRKVTFPDD 60

Query: 61  AYLEVTDGPAFSALLQETGHRDSLVVRLQHSWRHALAACVALVAVVILSYLYLLPLAAQG 120
           AYLE+ D  AF ALL +TGH+DS +VR+Q SWR AL A  A + V+ LSYLY+LPLA++G
Sbjct: 61  AYLEIVDTAAFDALLADTGHQDSFIVRMQQSWRGALGAVAATLVVLTLSYLYVLPLASEG 120

Query: 121 IVAVLPVEVDRQVGRGTLEFLDSHVLSKSQLDGRRAAAITARFKALTAPMDDAPEYQIVF 180
           I  +LP  V+R + +G L+FLD  + + S+L   R  A+  +FK L  P +  P Y+I+F
Sbjct: 121 IAKMLPERVERSISQGMLDFLDKRIFAPSKLPLARQQALIEQFKQLQPPREGVPNYRILF 180

Query: 181 RKSRIGPNAFALPSGQIVVTDEIVNLLDDDDALMGVLAHELGHVHRRHLMRRLIQSSAIA 240
           RKS+IGPNAFALPSG+I++TDE+V L+ +D+ +MGVLAHELGH+H RHLMRR++QSSAIA
Sbjct: 181 RKSKIGPNAFALPSGEIIITDELVQLMKNDEQIMGVLAHELGHLHERHLMRRVVQSSAIA 240

Query: 241 AAATVLFGDVSAVLANIPTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKLALVFEKLE 300
           A  TV+FGD SA++ANIPT+LLD+KYSRD EREADDYAIAM KANG+    +A  FE+L+
Sbjct: 241 ALVTVVFGDASAIVANIPTLLLDMKYSRDAEREADDYAIAMMKANGIDLAHMAGGFEQLQ 300

Query: 301 QVGEDHKDGPALPYLSSHPANEERIAHILGTR 332
                 ++    PYLSSHP+ +ERI HIL +R
Sbjct: 301 ATT---RETTPPPYLSSHPSTDERIEHILKSR 329


>gi|152981277|ref|YP_001354543.1| M48 family peptidase
           [Janthinobacterium sp. Marseille]
          Length = 524

 Score = 75.1 bits (183), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 73/161 (45%), Gaps = 28/161 (17%)

Query: 188 NAFALPSGQIVVTDEIVNLLDDDDALMGVLAHELGHVHRRHLMRRL-------------- 233
           NAFALP G I V   +V    ++  L  V+AHE+GHV +RH+ R L              
Sbjct: 127 NAFALPGGFIGVHSALVLAAQNESELASVMAHEIGHVAQRHIARMLGKQKQDMLIPLASM 186

Query: 234 ------IQSSAIAAAATVLFGDVSAVLANIPTVLLDLKYSRDIEREADDYAIAMFKANGL 287
                 I SS  A  A ++ G   A+          L +SRD EREAD   + + +  G 
Sbjct: 187 ILGALAISSSPDAGMAMIMGGQGLAIQRQ-------LNFSRDAEREADRVGLDIMREAGF 239

Query: 288 PRQKLALVFEKLEQVGEDHKDGPALPYLSSHPANEERIAHI 328
               +   F +L+    ++ D  A PYL SHP   ERIA I
Sbjct: 240 ETTGMINFFGRLQTASRNYSDN-APPYLRSHPMTTERIADI 279


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 733,498
Number of extensions: 28402
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 248
Effective length of database: 910,473
Effective search space: 225797304
Effective search space used: 225797304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)