BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3312.p
         (372 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981024|ref|YP_001352818.1| hypothetical protein mma_1128 [...   350   7e-98

>gi|152981024|ref|YP_001352818.1| hypothetical protein mma_1128
           [Janthinobacterium sp. Marseille]
          Length = 429

 Score =  350 bits (899), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 191/376 (50%), Positives = 252/376 (67%), Gaps = 29/376 (7%)

Query: 6   DLPDSAAQPPSTPPQAPANFATTLRDSADHSAPQGFSFSGSGSEYFRIWIVNLLLSIVTL 65
           ++P+S + P  TP +                    FSFSG+GSEYFRIWIVNLL SI+TL
Sbjct: 74  EIPESNSHPSDTPIR--------------------FSFSGTGSEYFRIWIVNLLFSILTL 113

Query: 66  GIYSAWAKVRRLRYFYDNTSVAGASFDYHGNPIAILKGRIIAVVVMGLYQLAAAFNIVLG 125
           GIYSAWAKVRR RYFY +TSVAG SF+YHGNP+AILKGRIIAV+++ +Y +A   + ++G
Sbjct: 114 GIYSAWAKVRRTRYFYGSTSVAGTSFEYHGNPVAILKGRIIAVLLIIIYNIAFEMSDLIG 173

Query: 126 LIAAIAMAVAGPWLIWRSLQFKLYNTSYRGIRFGFLGSAGGVFKNFFLWPLLASLSVGLL 185
           L+  + +    PWLIW+SLQFKLYN+SYRGIRFGF G+   ++  +   P+L  LS  LL
Sbjct: 174 LLMLLLVMALTPWLIWKSLQFKLYNSSYRGIRFGFRGALKQIYWVYLALPILTMLSAFLL 233

Query: 186 APLAYQRFKRYQHGQSRFGATQFDFTAKPGAFYKVFLIAFGIWLVGFLAAMAALVAVGYF 245
            P  +QR K++QH +SRFG + F F+   G+FY  +L+ F IWLVG +A    L    + 
Sbjct: 234 TPFTHQRVKKFQHQESRFGTSHFSFSGSVGSFYLAYLLVFVIWLVGVIAISVTLGGSLFA 293

Query: 246 HISLSVM------LPHGLPIII---ALYAWTFALYPLLMTQLQNLVWNSTRLGEHGFKST 296
            I+  VM            I++    LY W F L+P+  T +QNL+WN T+LG+H F S 
Sbjct: 294 IITADVMDREAASAAGAAGIVLFLGVLYVWMFLLFPIFATLIQNLIWNHTQLGQHRFLSD 353

Query: 297 MRWQRVVFIFITNLLGIAFTLGLYTPFAQIRMMRYRIESLALLPGGSLDEFLAASEPPGS 356
           M+W R+ FI ITN++GI  TLGL+ PFAQIR M+YR+E +AL P GSL+ F+AAS+   S
Sbjct: 354 MKWTRMAFITITNIIGIICTLGLFLPFAQIRAMKYRVECMALQPNGSLENFIAASQQQVS 413

Query: 357 ATGEGLGDLLDFDLSM 372
           ATGEG+ DLLDFDLS+
Sbjct: 414 ATGEGVADLLDFDLSL 429


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 815,851
Number of extensions: 32923
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 287
Effective length of database: 906,776
Effective search space: 260244712
Effective search space used: 260244712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)